track	KC_tracks
compositeTrack	on
shortLabel	KC Tracks
longLabel	KC ATACseq Depth
priority	100
visibility	full
subGroup1	view Views COVN=depthNorm
subGroup2	genotype Genotype KO=KO WT=WT 
subGroup3	celltype CellType GC=GC MC=MC Naive=Naive PC=PC 
subGroup4	replicate Replicate rep1=rep1 rep2=rep2 rep3=rep3 
dimensions	dimX=genotype dimY=celltype dimA=replicate
sortOrder	genotype=+ celltype=+ replicate=+
configurable	on
type	bed 3

   track	KC_tracksViewDepthN
   parent	KC_tracks
   shortLabel	NormDepth
   longLabel	Normalized ATAC-seq Depth
   view	COVN
   visibility	full
   type	bigWig
   allButtonPair	on
   dragAndDrop	on
   alwaysZero	on
   graphTypeDefault	bar
   maxHeightPixels	150:40:11
   viewLimits	0:100
   showSubtrackColorOnUi	on
   viewUi	on

      track	MTA3cKO-GC.rep1.ND
      parent	KC_tracksViewDepthN on
      bigDataUrl	DATA/MTA3cKO-GC.rep1.mm9.footprint.norm.bigWig
      shortLabel	MTA3cKO-GC.rep1
      longLabel	normalized read depth: MTA3cKO-GC.rep1
      type	bigWig
      color	0,0,153
      priority	101
      visibility	hide
      subGroups	genotype=KO celltype=GC replicate=rep1 view=COVN

      track	MTA3cKO-GC.rep2.ND
      parent	KC_tracksViewDepthN on
      bigDataUrl	DATA/MTA3cKO-GC.rep2.mm9.footprint.norm.bigWig
      shortLabel	MTA3cKO-GC.rep2
      longLabel	normalized read depth: MTA3cKO-GC.rep2
      type	bigWig
      color	0,0,153
      priority	102
      visibility	hide
      subGroups	genotype=KO celltype=GC replicate=rep2 view=COVN

      track	MTA3cKO-GC.rep3.ND
      parent	KC_tracksViewDepthN on
      bigDataUrl	DATA/MTA3cKO-GC.rep3.mm9.footprint.norm.bigWig
      shortLabel	MTA3cKO-GC.rep3
      longLabel	normalized read depth: MTA3cKO-GC.rep3
      type	bigWig
      color	0,0,153
      priority	103
      visibility	hide
      subGroups	genotype=KO celltype=GC replicate=rep3 view=COVN

      track	MTA3cKO-MC.rep1.ND
      parent	KC_tracksViewDepthN on
      bigDataUrl	DATA/MTA3cKO-MC.rep1.mm9.footprint.norm.bigWig
      shortLabel	MTA3cKO-MC.rep1
      longLabel	normalized read depth: MTA3cKO-MC.rep1
      type	bigWig
      color	0,0,153
      priority	104
      visibility	hide
      subGroups	genotype=KO celltype=MC replicate=rep1 view=COVN

      track	MTA3cKO-MC.rep2.ND
      parent	KC_tracksViewDepthN on
      bigDataUrl	DATA/MTA3cKO-MC.rep2.mm9.footprint.norm.bigWig
      shortLabel	MTA3cKO-MC.rep2
      longLabel	normalized read depth: MTA3cKO-MC.rep2
      type	bigWig
      color	0,0,153
      priority	105
      visibility	hide
      subGroups	genotype=KO celltype=MC replicate=rep2 view=COVN

      track	MTA3cKO-MC.rep3.ND
      parent	KC_tracksViewDepthN on
      bigDataUrl	DATA/MTA3cKO-MC.rep3.mm9.footprint.norm.bigWig
      shortLabel	MTA3cKO-MC.rep3
      longLabel	normalized read depth: MTA3cKO-MC.rep3
      type	bigWig
      color	0,0,153
      priority	106
      visibility	hide
      subGroups	genotype=KO celltype=MC replicate=rep3 view=COVN

      track	MTA3cKO-Naive.rep1.ND
      parent	KC_tracksViewDepthN on
      bigDataUrl	DATA/MTA3cKO-Naive.rep1.mm9.footprint.norm.bigWig
      shortLabel	MTA3cKO-Naive.rep1
      longLabel	normalized read depth: MTA3cKO-Naive.rep1
      type	bigWig
      color	0,0,153
      priority	107
      visibility	hide
      subGroups	genotype=KO celltype=Naive replicate=rep1 view=COVN

      track	MTA3cKO-Naive.rep2.ND
      parent	KC_tracksViewDepthN on
      bigDataUrl	DATA/MTA3cKO-Naive.rep2.mm9.footprint.norm.bigWig
      shortLabel	MTA3cKO-Naive.rep2
      longLabel	normalized read depth: MTA3cKO-Naive.rep2
      type	bigWig
      color	0,0,153
      priority	108
      visibility	hide
      subGroups	genotype=KO celltype=Naive replicate=rep2 view=COVN

      track	MTA3cKO-Naive.rep3.ND
      parent	KC_tracksViewDepthN on
      bigDataUrl	DATA/MTA3cKO-Naive.rep3.mm9.footprint.norm.bigWig
      shortLabel	MTA3cKO-Naive.rep3
      longLabel	normalized read depth: MTA3cKO-Naive.rep3
      type	bigWig
      color	0,0,153
      priority	109
      visibility	hide
      subGroups	genotype=KO celltype=Naive replicate=rep3 view=COVN

      track	MTA3cKO-PC.rep1.ND
      parent	KC_tracksViewDepthN on
      bigDataUrl	DATA/MTA3cKO-PC.rep1.mm9.footprint.norm.bigWig
      shortLabel	MTA3cKO-PC.rep1
      longLabel	normalized read depth: MTA3cKO-PC.rep1
      type	bigWig
      color	0,0,153
      priority	110
      visibility	hide
      subGroups	genotype=KO celltype=PC replicate=rep1 view=COVN

      track	MTA3cKO-PC.rep2.ND
      parent	KC_tracksViewDepthN on
      bigDataUrl	DATA/MTA3cKO-PC.rep2.mm9.footprint.norm.bigWig
      shortLabel	MTA3cKO-PC.rep2
      longLabel	normalized read depth: MTA3cKO-PC.rep2
      type	bigWig
      color	0,0,153
      priority	111
      visibility	hide
      subGroups	genotype=KO celltype=PC replicate=rep2 view=COVN

      track	MTA3cKO-PC.rep3.ND
      parent	KC_tracksViewDepthN on
      bigDataUrl	DATA/MTA3cKO-PC.rep3.mm9.footprint.norm.bigWig
      shortLabel	MTA3cKO-PC.rep3
      longLabel	normalized read depth: MTA3cKO-PC.rep3
      type	bigWig
      color	0,0,153
      priority	112
      visibility	hide
      subGroups	genotype=KO celltype=PC replicate=rep3 view=COVN

      track	MTA3cWT-GC.rep1.ND
      parent	KC_tracksViewDepthN on
      bigDataUrl	DATA/MTA3cWT-GC.rep1.mm9.footprint.norm.bigWig
      shortLabel	MTA3cWT-GC.rep1
      longLabel	normalized read depth: MTA3cWT-GC.rep1
      type	bigWig
      color	0,0,153
      priority	113
      visibility	hide
      subGroups	genotype=WT celltype=GC replicate=rep1 view=COVN

      track	MTA3cWT-GC.rep2.ND
      parent	KC_tracksViewDepthN on
      bigDataUrl	DATA/MTA3cWT-GC.rep2.mm9.footprint.norm.bigWig
      shortLabel	MTA3cWT-GC.rep2
      longLabel	normalized read depth: MTA3cWT-GC.rep2
      type	bigWig
      color	0,0,153
      priority	114
      visibility	hide
      subGroups	genotype=WT celltype=GC replicate=rep2 view=COVN

      track	MTA3cWT-GC.rep3.ND
      parent	KC_tracksViewDepthN on
      bigDataUrl	DATA/MTA3cWT-GC.rep3.mm9.footprint.norm.bigWig
      shortLabel	MTA3cWT-GC.rep3
      longLabel	normalized read depth: MTA3cWT-GC.rep3
      type	bigWig
      color	0,0,153
      priority	115
      visibility	hide
      subGroups	genotype=WT celltype=GC replicate=rep3 view=COVN

      track	MTA3cWT-MC.rep1.ND
      parent	KC_tracksViewDepthN on
      bigDataUrl	DATA/MTA3cWT-MC.rep1.mm9.footprint.norm.bigWig
      shortLabel	MTA3cWT-MC.rep1
      longLabel	normalized read depth: MTA3cWT-MC.rep1
      type	bigWig
      color	0,0,153
      priority	116
      visibility	hide
      subGroups	genotype=WT celltype=MC replicate=rep1 view=COVN

      track	MTA3cWT-MC.rep2.ND
      parent	KC_tracksViewDepthN on
      bigDataUrl	DATA/MTA3cWT-MC.rep2.mm9.footprint.norm.bigWig
      shortLabel	MTA3cWT-MC.rep2
      longLabel	normalized read depth: MTA3cWT-MC.rep2
      type	bigWig
      color	0,0,153
      priority	117
      visibility	hide
      subGroups	genotype=WT celltype=MC replicate=rep2 view=COVN

      track	MTA3cWT-MC.rep3.ND
      parent	KC_tracksViewDepthN on
      bigDataUrl	DATA/MTA3cWT-MC.rep3.mm9.footprint.norm.bigWig
      shortLabel	MTA3cWT-MC.rep3
      longLabel	normalized read depth: MTA3cWT-MC.rep3
      type	bigWig
      color	0,0,153
      priority	118
      visibility	hide
      subGroups	genotype=WT celltype=MC replicate=rep3 view=COVN

      track	MTA3cWT-Naive.rep1.ND
      parent	KC_tracksViewDepthN on
      bigDataUrl	DATA/MTA3cWT-Naive.rep1.mm9.footprint.norm.bigWig
      shortLabel	MTA3cWT-Naive.rep1
      longLabel	normalized read depth: MTA3cWT-Naive.rep1
      type	bigWig
      color	0,0,153
      priority	119
      visibility	hide
      subGroups	genotype=WT celltype=Naive replicate=rep1 view=COVN

      track	MTA3cWT-Naive.rep2.ND
      parent	KC_tracksViewDepthN on
      bigDataUrl	DATA/MTA3cWT-Naive.rep2.mm9.footprint.norm.bigWig
      shortLabel	MTA3cWT-Naive.rep2
      longLabel	normalized read depth: MTA3cWT-Naive.rep2
      type	bigWig
      color	0,0,153
      priority	120
      visibility	hide
      subGroups	genotype=WT celltype=Naive replicate=rep2 view=COVN

      track	MTA3cWT-Naive.rep3.ND
      parent	KC_tracksViewDepthN on
      bigDataUrl	DATA/MTA3cWT-Naive.rep3.mm9.footprint.norm.bigWig
      shortLabel	MTA3cWT-Naive.rep3
      longLabel	normalized read depth: MTA3cWT-Naive.rep3
      type	bigWig
      color	0,0,153
      priority	121
      visibility	hide
      subGroups	genotype=WT celltype=Naive replicate=rep3 view=COVN

      track	MTA3cWT-PC.rep1.ND
      parent	KC_tracksViewDepthN on
      bigDataUrl	DATA/MTA3cWT-PC.rep1.mm9.footprint.norm.bigWig
      shortLabel	MTA3cWT-PC.rep1
      longLabel	normalized read depth: MTA3cWT-PC.rep1
      type	bigWig
      color	0,0,153
      priority	122
      visibility	hide
      subGroups	genotype=WT celltype=PC replicate=rep1 view=COVN

      track	MTA3cWT-PC.rep2.ND
      parent	KC_tracksViewDepthN on
      bigDataUrl	DATA/MTA3cWT-PC.rep2.mm9.footprint.norm.bigWig
      shortLabel	MTA3cWT-PC.rep2
      longLabel	normalized read depth: MTA3cWT-PC.rep2
      type	bigWig
      color	0,0,153
      priority	123
      visibility	hide
      subGroups	genotype=WT celltype=PC replicate=rep2 view=COVN

      track	MTA3cWT-PC.rep3.ND
      parent	KC_tracksViewDepthN on
      bigDataUrl	DATA/MTA3cWT-PC.rep3.mm9.footprint.norm.bigWig
      shortLabel	MTA3cWT-PC.rep3
      longLabel	normalized read depth: MTA3cWT-PC.rep3
      type	bigWig
      color	0,0,153
      priority	124
      visibility	hide
      subGroups	genotype=WT celltype=PC replicate=rep3 view=COVN