#!/bin/bash
#
# some commands used to create the tracksDb.txt metadata


## bigBed files for K4 and K36
for k in K4 K36; do for t in UNTR DEX MG MGDEX; do FILE=`ls *.bb | grep ${t} | grep ${k} | grep -vi MG${t} | grep -vi ${t}DEX`; echo "track      Peaks-${k}-${t}"; echo "bigDataUrl ${FILE}";echo "shortLabel ${k}-${t} Peaks"; echo "longLabel  Enriched regions for ${k} ${t}"; echo "type       bigBed"; echo ""; done; done >> tracksDb.txt

## run hubCheck
hubCheck -noTracks -udcDir=/ddn/gs1/home/wardjm/tmp http://snpinfo.niehs.nih.gov/ucscview/kinyamuMGDEXhub/hub.txt