## Colors for the 4 treatments: ## UNTR #color -70,70,70 #color 90,90,90 ## DEX #color -0,80,153 #color 30,40,200 ## MG #color -0,119,34 #color 10,130,0 ## MGDEX #color -119,40,153 #color 120,0,150 ################### ## Track composites: track k4peakSet compositeTrack on shortLabel Kinyamu H3K4me3 Peaks longLabel Composite of Kinyamu H3K4me3 peaks using SICER type bigBed allButtonPair on centerLabelsDense on dragAndDrop on priority 10 visibility dense track k4set compositeTrack on shortLabel Kinyamu H3K4me3 Tracks longLabel Composite of Kinyamu H3K4me3 coverage tracks type bigWig allButtonPair on centerLabelsDense on dragAndDrop on priority 20 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 4 transformFunc LOG windowingFunction mean+whiskers gridDefault on viewLimits 0:5 visibility full track k4inputSet compositeTrack on shortLabel Kinyamu H3K4me3 Input Tracks longLabel Composite of Kinyamu H3K4me3 input coverage tracks type bigWig allButtonPair on centerLabelsDense on dragAndDrop on priority 20 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 4 transformFunc LOG windowingFunction mean+whiskers gridDefault on viewLimits 0:5 track k36peakSet compositeTrack on shortLabel Kinyamu H3K36me3 2of3 Peaks longLabel Composite of Kinyamu H3K36me3 2-of-3 peaks using SICER, CCAT3, and QuEST type bigBed allButtonPair on centerLabelsDense on dragAndDrop on priority 30 visibility dense track k36set compositeTrack on shortLabel Kinyamu H3K36me3 Tracks longLabel Composite of Kinyamu H3K36me3 coverage tracks type bigWig allButtonPair on centerLabelsDense on dragAndDrop on priority 40 graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 4 transformFunc LOG windowingFunction mean+whiskers gridDefault on viewLimits 0:5 visibility full #################### ## Track definitions: track Input-DEX-MCF7 parent k4inputSet bigDataUrl kinyamu-Input-DEX-MCF7.bw shortLabel Input-DEX-MCF7 Signal longLabel Depth of Input-DEX-MCF7 reads type bigWig color 30,40,200 priority 312 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 4 transformFunc LOG windowingFunction mean+whiskers gridDefault on viewLimits 0:5 visibility hide track Input-MG-MCF7 parent k4inputSet bigDataUrl kinyamu-Input-MG-MCF7.bw shortLabel Input-MG-MCF7 Signal longLabel Depth of Input-MG-MCF7 reads type bigWig color 10,130,0 priority 313 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 4 transformFunc LOG windowingFunction mean+whiskers gridDefault on viewLimits 0:5 visibility hide track Input-MGDEX-MCF7 parent k4inputSet bigDataUrl kinyamu-Input-MGDEX-MCF7.bw shortLabel Input-MGDEX-MCF7 Signal longLabel Depth of Input-MGDEX-MCF7 reads type bigWig color 120,0,150 priority 314 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 4 transformFunc LOG windowingFunction mean+whiskers gridDefault on viewLimits 0:5 visibility hide track Input-UNTR-MCF7 parent k4inputSet bigDataUrl kinyamu-Input-UNTR-MCF7.bw shortLabel Input-UNTR-MCF7 Signal longLabel Depth of Input-UNTR-MCF7 reads type bigWig color 90,90,90 priority 311 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 4 transformFunc LOG windowingFunction mean+whiskers gridDefault on viewLimits 0:5 visibility hide track K4-DEX-MCF7 parent k4set on bigDataUrl kinyamu-K4-DEX-MCF7.bw shortLabel K4-DEX-MCF7 Signal longLabel Depth of K4-DEX-MCF7 reads type bigWig color 30,40,200 priority 202 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 4 transformFunc LOG windowingFunction mean+whiskers gridDefault on viewLimits 0:5 visibility full track K4-MG-MCF7 parent k4set on bigDataUrl kinyamu-K4-MG-MCF7.bw shortLabel K4-MG-MCF7 Signal longLabel Depth of K4-MG-MCF7 reads type bigWig color 10,130,0 priority 203 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 4 transformFunc LOG windowingFunction mean+whiskers gridDefault on viewLimits 0:5 visibility full track K4-MGDEX-MCF7 parent k4set on bigDataUrl kinyamu-K4-MGDEX-MCF7.bw shortLabel K4-MGDEX-MCF7 Signal longLabel Depth of K4-MGDEX-MCF7 reads type bigWig color 120,0,150 priority 204 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 4 transformFunc LOG windowingFunction mean+whiskers gridDefault on viewLimits 0:5 visibility full track K4-UNTR-MCF7 parent k4set on bigDataUrl kinyamu-K4-UNTR-MCF7.bw shortLabel K4-UNTR-MCF7 Signal longLabel Depth of K4-UNTR-MCF7 reads type bigWig color 90,90,90 priority 201 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 4 transformFunc LOG windowingFunction mean+whiskers gridDefault on viewLimits 0:5 visibility full track dexK36adjIgG parent k36set on bigDataUrl dexK36adjIgG-floor0.bw shortLabel dex-K36-adjIgG Signal longLabel Depth of dex-K36-adjIgG reads type bigWig color 30,40,200 priority 212 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 4 transformFunc LOG windowingFunction mean+whiskers gridDefault on viewLimits 0:5 visibility full track mgK36adjIgG parent k36set on bigDataUrl mgK36adjIgG-floor0.bw shortLabel mg-K36-adjIgG Signal longLabel Depth of mg-K36-adjIgG reads type bigWig color 10,130,0 priority 213 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 4 transformFunc LOG windowingFunction mean+whiskers gridDefault on viewLimits 0:5 visibility full track mgdexK36adjIgG parent k36set on bigDataUrl mgdexK36adjIgG-floor0.bw shortLabel mgdex-K36-adjIgG Signal longLabel Depth of mgdex-K36-adjIgG reads type bigWig color 120,0,150 priority 214 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 4 transformFunc LOG windowingFunction mean+whiskers gridDefault on viewLimits 0:5 visibility full track untrK36adjIgG parent k36set on bigDataUrl untrK36adjIgG-floor0.bw shortLabel untr-K36-adjIgG Signal longLabel Depth of untr-K36-adjIgG reads type bigWig color 90,90,90 priority 211 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 4 transformFunc LOG windowingFunction mean+whiskers gridDefault on viewLimits 0:5 visibility full track Peaks-K4-UNTR parent k4peakSet on bigDataUrl K4_UNTR_SICER-island-FDR.bed.bb shortLabel K4-UNTR Peaks longLabel Enriched regions for K4 UNTR type bigBed color 90,90,90 visibility dense priority 101 track Peaks-K4-DEX parent k4peakSet on bigDataUrl K4_DEX_SICER-island-FDR.bed.bb shortLabel K4-DEX Peaks longLabel Enriched regions for K4 DEX type bigBed color 30,40,200 visibility dense priority 102 track Peaks-K4-MG parent k4peakSet on bigDataUrl K4_MG_SICER-island-FDR.bed.bb shortLabel K4-MG Peaks longLabel Enriched regions for K4 MG type bigBed color 10,130,0 visibility dense priority 103 track Peaks-K4-MGDEX parent k4peakSet on bigDataUrl K4_MGDEX_SICER-island-FDR.bed.bb shortLabel K4-MGDEX Peaks longLabel Enriched regions for K4 MGDEX type bigBed color 120,0,150 visibility dense priority 104 track Peaks-K36-UNTR parent k36peakSet on bigDataUrl UNTRK36_2of3_peaks.bed.bb shortLabel K36-UNTR Peaks longLabel Enriched regions for K36 UNTR type bigBed color 90,90,90 visibility dense priority 111 track Peaks-K36-DEX parent k36peakSet on bigDataUrl DEXK36_2of3_peaks.bed.bb shortLabel K36-DEX Peaks longLabel Enriched regions for K36 DEX type bigBed color 30,40,200 visibility dense priority 112 track Peaks-K36-MG parent k36peakSet on bigDataUrl MGK36_2of3_peaks.bed.bb shortLabel K36-MG Peaks longLabel Enriched regions for K36 MG type bigBed color 10,130,0 visibility dense priority 113 track Peaks-K36-MGDEX parent k36peakSet bigDataUrl MGDEXK36_2of3_peaks.bed.bb shortLabel K36-MGDEX Peaks longLabel Enriched regions for K36 MGDEX type bigBed color 120,0,150 visibility dense priority 114