## Colors for the 4 treatments: ## UNTR #color -70,70,70 #color 90,90,90 ## DEX #color -0,80,153 #color 30,40,200 ## MG #color -0,119,34 #color 10,130,0 ## MGDEX #color -119,40,153 #color 120,0,150 ################### ## Track composites: ## ## Peak sets: track k4peakSet compositeTrack on shortLabel Kinyamu H3K4me3 Peaks longLabel Composite of Kinyamu H3K4me3 peaks using SICER type bigBed allButtonPair on centerLabelsDense on dragAndDrop on priority 10 #visibility dense track k4peakSetV1.1 compositeTrack on shortLabel Kinyamu H3K4me3 Peaks v1.1 longLabel Composite of Kinyamu H3K4me3 peaks using SICER v1.1 type bigBed allButtonPair on centerLabelsDense on dragAndDrop on priority 10 visibility dense track k36peakSet compositeTrack on shortLabel Kinyamu H3K36me3 2of3 Peaks longLabel Composite of Kinyamu H3K36me3 2-of-3 peaks using SICER, CCAT3, and QuEST type bigBed allButtonPair on centerLabelsDense on dragAndDrop on priority 30 visibility dense ## ## Coverage bigWigs: ## K4 track k4set compositeTrack on shortLabel Kinyamu H3K4me3 Tracks longLabel Composite of Kinyamu H3K4me3 coverage tracks type bigWig allButtonPair on centerLabelsDense on dragAndDrop on priority 20 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:20 visibility full ## K4 input track k4inputSet compositeTrack on shortLabel Kinyamu H3K4me3 Input Tracks longLabel Composite of Kinyamu H3K4me3 input coverage tracks type bigWig allButtonPair on centerLabelsDense on dragAndDrop on priority 20 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:20 ## K36 track k36set compositeTrack on shortLabel Kinyamu H3K36me3 Tracks longLabel Composite of Kinyamu H3K36me3 coverage tracks type bigWig allButtonPair on centerLabelsDense on dragAndDrop on priority 40 graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 4 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:20 visibility full #################### ## Track definitions: ## ## K4 input coverage track Input-DEX-MCF7 parent k4inputSet bigDataUrl kinyamu-Input-DEX-MCF7.bw shortLabel Input-DEX-MCF7 Signal longLabel Depth of Input-DEX-MCF7 reads type bigWig color 30,40,200 priority 312 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 8 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:20 visibility hide track Input-MG-MCF7 parent k4inputSet bigDataUrl kinyamu-Input-MG-MCF7.bw shortLabel Input-MG-MCF7 Signal longLabel Depth of Input-MG-MCF7 reads type bigWig color 10,130,0 priority 313 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 8 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:20 visibility hide track Input-MGDEX-MCF7 parent k4inputSet bigDataUrl kinyamu-Input-MGDEX-MCF7.bw shortLabel Input-MGDEX-MCF7 Signal longLabel Depth of Input-MGDEX-MCF7 reads type bigWig color 120,0,150 priority 314 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 8 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:20 visibility hide track Input-UNTR-MCF7 parent k4inputSet bigDataUrl kinyamu-Input-UNTR-MCF7.bw shortLabel Input-UNTR-MCF7 Signal longLabel Depth of Input-UNTR-MCF7 reads type bigWig color 90,90,90 priority 311 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 8 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:20 visibility hide ## K4 coverage track K4-UNTR-MCF7 parent k4set on bigDataUrl kinyamu-K4-UNTR-MCF7.bw shortLabel K4-UNTR-MCF7 Signal longLabel Depth of K4-UNTR-MCF7 reads type bigWig color 90,90,90 priority 221 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:20 visibility full track K4-DEX-MCF7 parent k4set on bigDataUrl kinyamu-K4-DEX-MCF7.bw shortLabel K4-DEX-MCF7 Signal longLabel Depth of K4-DEX-MCF7 reads type bigWig color 30,40,200 priority 222 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 8 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:20 visibility full track K4-MG-MCF7 parent k4set on bigDataUrl kinyamu-K4-MG-MCF7.bw shortLabel K4-MG-MCF7 Signal longLabel Depth of K4-MG-MCF7 reads type bigWig color 10,130,0 priority 223 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:20 visibility full track K4-MGDEX-MCF7 parent k4set on bigDataUrl kinyamu-K4-MGDEX-MCF7.bw shortLabel K4-MGDEX-MCF7 Signal longLabel Depth of K4-MGDEX-MCF7 reads type bigWig color 120,0,150 priority 224 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:20 visibility full ## K36 coverage track untrK36adjIgG parent k36set on bigDataUrl untrK36adjIgG-floor0.bw shortLabel untr-K36-adjIgG Signal longLabel Depth of untr-K36-adjIgG reads type bigWig color 90,90,90 priority 241 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 4 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:20 visibility full track dexK36adjIgG parent k36set on bigDataUrl dexK36adjIgG-floor0.bw shortLabel dex-K36-adjIgG Signal longLabel Depth of dex-K36-adjIgG reads type bigWig color 30,40,200 priority 242 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 4 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:20 visibility full track mgK36adjIgG parent k36set on bigDataUrl mgK36adjIgG-floor0.bw shortLabel mg-K36-adjIgG Signal longLabel Depth of mg-K36-adjIgG reads type bigWig color 10,130,0 priority 243 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 4 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:20 visibility full track mgdexK36adjIgG parent k36set on bigDataUrl mgdexK36adjIgG-floor0.bw shortLabel mgdex-K36-adjIgG Signal longLabel Depth of mgdex-K36-adjIgG reads type bigWig color 120,0,150 priority 244 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 4 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:20 visibility full ## K4 peaks track Peaks-K4-UNTR parent k4peakSet bigDataUrl K4_UNTR_SICER-island-FDR.bed.bb shortLabel K4-UNTR Peaks longLabel Enriched regions for K4 UNTR type bigBed color 90,90,90 visibility dense priority 421 track Peaks-K4-DEX parent k4peakSet bigDataUrl K4_DEX_SICER-island-FDR.bed.bb shortLabel K4-DEX Peaks longLabel Enriched regions for K4 DEX type bigBed color 30,40,200 visibility dense priority 422 track Peaks-K4-MG parent k4peakSet bigDataUrl K4_MG_SICER-island-FDR.bed.bb shortLabel K4-MG Peaks longLabel Enriched regions for K4 MG type bigBed color 10,130,0 visibility dense priority 423 track Peaks-K4-MGDEX parent k4peakSet bigDataUrl K4_MGDEX_SICER-island-FDR.bed.bb shortLabel K4-MGDEX Peaks longLabel Enriched regions for K4 MGDEX type bigBed color 120,0,150 visibility dense priority 424 ## K36 peaks track Peaks-K36-UNTR parent k36peakSet on bigDataUrl UNTRK36_2of3_peaks.bed.bb shortLabel K36-UNTR Peaks longLabel Enriched regions for K36 UNTR type bigBed color 90,90,90 visibility dense priority 131 track Peaks-K36-DEX parent k36peakSet on bigDataUrl DEXK36_2of3_peaks.bed.bb shortLabel K36-DEX Peaks longLabel Enriched regions for K36 DEX type bigBed color 30,40,200 visibility dense priority 132 track Peaks-K36-MG parent k36peakSet on bigDataUrl MGK36_2of3_peaks.bed.bb shortLabel K36-MG Peaks longLabel Enriched regions for K36 MG type bigBed color 10,130,0 visibility dense priority 133 track Peaks-K36-MGDEX parent k36peakSet on bigDataUrl MGDEXK36_2of3_peaks.bed.bb shortLabel K36-MGDEX Peaks longLabel Enriched regions for K36 MGDEX type bigBed color 120,0,150 visibility dense priority 134 ## New SICERv1.1 K4 peaks track Peaks-K4-UNTRv1.1 parent k4peakSetV1.1 on bigDataUrl K4-UNTR-W200-G400-SICERv1.1-FDR1E-25.bb shortLabel K4-UNTR-v1.1 peaks longLabel Enriched regions for K4 UNTR (SICER v1.1) type bigBed color 90,90,90 visibility dense priority 111 track Peaks-K4-DEXv1.1 parent k4peakSetV1.1 on bigDataUrl K4-DEX-W200-G400-SICERv1.1-FDR1E-25.bb shortLabel K4-DEX-v1.1 peaks longLabel Enriched regions for K4 DEX (SICER v1.1) type bigBed color 30,40,200 visibility dense priority 112 track Peaks-K4-MGv1.1 parent k4peakSetV1.1 on bigDataUrl K4-MG-W200-G400-SICERv1.1-FDR1E-25.bb shortLabel K4-MG-v1.1 peaks longLabel Enriched regions for K4 MG (SICER v1.1) type bigBed color 10,130,0 visibility dense priority 113 track Peaks-K4-MGDEXv1.1 parent k4peakSetV1.1 on bigDataUrl K4-MGDEX-W200-G400-SICERv1.1-FDR1E-25.bb shortLabel K4-MGDEX-v1.1 peaks longLabel Enriched regions for K4 MGDEX (SICER v1.1) type bigBed color 120,0,150 visibility dense priority 114 ########################## ## Track multiWig overlays: # K36 signal track k36multiWig container multiWig aggregate transparentOverlay shortLabel K36 Adjusted Signal longLabel K36 Adjusted Signal showSubtrackColorOnUi on type bigWig viewLimits 0:48 maxHeightPixels 100:48:8 alwaysZero on graphTypeDefault bar smoothingWindow 8 transformFunc NONE windowingFunction maximum visibility full track untrK36multiWig table untrK36adjIgG bigDataUrl untrK36adjIgG-floor0.bw type bigWig parent k36multiWig color 160,160,160 priority 141 track dexK36multiWig table dexK36adjIgG bigDataUrl dexK36adjIgG-floor0.bw type bigWig parent k36multiWig color 70,100,220 priority 142 track mgK36multiWig table mgK36adjIgG bigDataUrl mgK36adjIgG-floor0.bw type bigWig parent k36multiWig color 130,190,100 priority 143 track mgdexK36multiWig table mgdexK36adjIgG bigDataUrl mgdexK36adjIgG-floor0.bw type bigWig parent k36multiWig color 170,80,220 priority 144 # K4 signal track k4multiWig container multiWig aggregate transparentOverlay shortLabel K4 Adjusted Signal longLabel K4 Adjusted Signal showSubtrackColorOnUi on type bigWig viewLimits 0:48 maxHeightPixels 100:48:8 alwaysZero on graphTypeDefault bar smoothingWindow 8 transformFunc NONE windowingFunction maximum visibility full track untrK4multiWig bigDataUrl kinyamu-K4-UNTR-MCF7.bw type bigWig parent k4multiWig color 160,160,160 priority 121 track dexK4multiWig bigDataUrl kinyamu-K4-DEX-MCF7.bw type bigWig parent k4multiWig color 70,100,220 priority 122 track mgK4multiWig bigDataUrl kinyamu-K4-MG-MCF7.bw type bigWig parent k4multiWig color 130,190,100 priority 123 track mgdexK4multiWig bigDataUrl kinyamu-K4-MGDEX-MCF7.bw type bigWig parent k4multiWig color 170,80,220 priority 124