## Colors for the 4 treatments: ################### ## Track composites ## ## Coverage bigWigs: track lin28covSet compositeTrack on shortLabel Kinyamu H3K4me3 Tracks longLabel Lin28 and IgG coverage type bigWig allButtonPair on centerLabelsDense on dragAndDrop on priority 20 alwaysZero on autoScale on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility full ## bigBed files track topHat2Files compositeTrack on shortLabel TopHat2 files longLabel Composite of TopHat2 files for Lin28 and IgG type bigBed 12 allButtonPair on centerLabelsDense on dragAndDrop on priority 30 visibility dense spectrum on scoreMin 1 scoreMax 20 color 0,0,128 minGrayLevel 4 #################### ## Track definitions: ## ## TopHat2 files track Junctions_Lin28 parent topHat2Files on bigDataUrl Lin28_junctions.bb shortLabel Lin28 Junctions longLabel Lin28 Junctions type bigBed 12 #color 40,90,140 visibility dense priority 431 spectrum on scoreMin 1 scoreMax 20 color 0,0,128 minGrayLevel 4 track Junctions_IgG parent topHat2Files on bigDataUrl IgG_junctions.bb shortLabel IgG Junctions longLabel IgG Junctions type bigBed 12 #color 72,89,86 visibility dense priority 432 spectrum on scoreMin 1 scoreMax 20 color 0,0,128 minGrayLevel 4 ## lin28 coverage from bowtie mapping track lin28 parent lin28covSet bigDataUrl lin28_bowtie.bw shortLabel Lin28 bowtie longLabel Lin28 bowtie reads type bigWig color 10,107,91 priority 312 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 autoScale on smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide ## lin28 coverage from bowtie mapping track igg parent lin28covSet bigDataUrl igg_bowtie.bw shortLabel IgG bowtie longLabel IgG bowtie reads type bigWig color 80,86,91 priority 313 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 autoScale on smoothingWindow 8 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide ## lin28 coverage from bowtie mapping track Lin28_tophat parent lin28covSet bigDataUrl Lin28.sickle.topHat2se_hg19.bw shortLabel Lin28 TopHat2 longLabel Lin28 TopHat2 reads type bigWig color 40,90,140 priority 314 alwaysZero on graphTypeDefault bar autoScale on maxHeightPixels 100:24:8 smoothingWindow 8 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide ## lin28 coverage from bowtie mapping track IgG_tophat parent lin28covSet bigDataUrl IgG.sickle.topHat2se_hg19.bw shortLabel IgG TopHat2 longLabel IgG TopHat2 reads type bigWig color 72,89,86 priority 315 alwaysZero on graphTypeDefault bar autoScale on maxHeightPixels 100:24:8 smoothingWindow 8 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide