track	PS_tracks.b1b2
compositeTrack	on
shortLabel	PS RNAseq (two batches)
longLabel	PSil RNAseq Depth (two batches)
priority	100
visibility	full
subGroup1	view View COVN=depthNorm
subGroup2	genotype Genotype RubWT=RubWT RubKO=RubKO
subGroup3	treatment Treatment notxt=notxt 30min_OVA=30min_OVA 4hr_OVA=4hr_OVA 30min_apopJC=30min_apopJC 4hr_apopJC=4hr_apopJC
dimensions	dimX=genotype dimY=treatment
sortOrder	genotype=+ treatment=+
configurable	on
type	bigWig

   track	PS_tracksb1b2ViewDepthN
   parent	PS_tracks.b1b2
   shortLabel	NormDepth
   longLabel	Normalized RNA-seq Depth
   view	COVN
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   type	bigWig
   allButtonPair	on
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      track	RubWT-notxt-1.ND.B1B2
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      track	RubWT-notxt-2.ND.B1B2
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      subGroups	genotype=RubWT treatment=notxt view=COVN

      track	RubWT-notxt-3.ND.B1B2
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      subGroups	genotype=RubWT treatment=notxt view=COVN

      track	RubWT-30min_OVA-1.ND.B1B2
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      track	RubWT-30min_OVA-2.ND.B1B2
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      track	RubWT-30min_OVA-3.ND.B1B2
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      subGroups	genotype=RubWT treatment=30min_OVA view=COVN

      track	RubWT-4hr_OVA-1.ND.B1B2
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      track	RubWT-4hr_OVA-2.ND.B1B2
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      track	RubWT-4hr_OVA-3.ND.B1B2
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      track	RubWT-30min_apopJC-1.ND.B1B2
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      subGroups	genotype=RubWT treatment=30min_apopJC view=COVN

      track	RubWT-30min_apopJC-2.ND.B1B2
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      subGroups	genotype=RubWT treatment=30min_apopJC view=COVN

      track	RubWT-30min_apopJC-3.ND.B1B2
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      track	RubWT-4hr_apopJC-1.ND.B1B2
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      track	RubWT-4hr_apopJC-2.ND.B1B2
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      track	RubWT-4hr_apopJC-3.ND.B1B2
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      subGroups	genotype=RubWT treatment=4hr_apopJC view=COVN

      track	RubWT-4hr_apopJC-4.ND.B1B2
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      visibility	hide
      subGroups	genotype=RubWT treatment=4hr_apopJC view=COVN

      track	RubWT-4hr_apopJC-5.ND.B1B2
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      subGroups	genotype=RubWT treatment=4hr_apopJC view=COVN

      track	RubWT-4hr_apopJC-6.ND.B1B2
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      subGroups	genotype=RubWT treatment=4hr_apopJC view=COVN

      track	RubKO-notxt-1.ND.B1B2
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      subGroups	genotype=RubKO treatment=notxt view=COVN

      track	RubKO-notxt-2.ND.B1B2
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      subGroups	genotype=RubKO treatment=notxt view=COVN

      track	RubKO-notxt-3.ND.B1B2
      parent	PS_tracksb1b2ViewDepthN on
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      type	bigWig
      color	0,0,204
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      visibility	hide
      subGroups	genotype=RubKO treatment=notxt view=COVN

      track	RubKO-30min_OVA-1.ND.B1B2
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      color	0,0,204
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      subGroups	genotype=RubKO treatment=30min_OVA view=COVN

      track	RubKO-30min_OVA-2.ND.B1B2
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      subGroups	genotype=RubKO treatment=30min_OVA view=COVN

      track	RubKO-30min_OVA-3.ND.B1B2
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      subGroups	genotype=RubKO treatment=30min_OVA view=COVN

      track	RubKO-4hr_OVA-1.ND.B1B2
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      track	RubKO-4hr_OVA-2.ND.B1B2
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      track	RubKO-4hr_OVA-3.ND.B1B2
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      track	RubKO-30min_apopJC-1.ND.B1B2
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      track	RubKO-30min_apopJC-2.ND.B1B2
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      track	RubKO-30min_apopJC-3.ND.B1B2
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      track	RubKO-4hr_apopJC-1.ND.B1B2
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      track	RubKO-4hr_apopJC-2.ND.B1B2
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      track	RubKO-4hr_apopJC-3.ND.B1B2
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      track	RubKO-4hr_apopJC-4.ND.B1B2
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      track	RubKO-4hr_apopJC-5.ND.B1B2
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      subGroups	genotype=RubKO treatment=4hr_apopJC view=COVN

      track	RubKO-4hr_apopJC-6.ND.B1B2
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track	PS_tracks
compositeTrack	on
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visibility	full
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dimensions	dimX=genotype dimY=treatment
sortOrder	genotype=+ treatment=+
configurable	on
type	bigWig

   track	PS_tracksViewDepthN
   parent	PS_tracks
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   allButtonPair	on
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      track	RubWT-notxt-1.ND
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      track	RubWT-notxt-2.ND
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      track	RubWT-notxt-3.ND
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      track	RubWT-30min_OVA-1.ND
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      subGroups	genotype=RubWT treatment=30min_OVA view=COVN

      track	RubWT-30min_OVA-2.ND
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      subGroups	genotype=RubWT treatment=30min_OVA view=COVN

      track	RubWT-30min_OVA-3.ND
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      subGroups	genotype=RubWT treatment=30min_OVA view=COVN

      track	RubWT-4hr_OVA-1.ND
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      subGroups	genotype=RubWT treatment=4hr_OVA view=COVN

      track	RubWT-4hr_OVA-2.ND
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      subGroups	genotype=RubWT treatment=4hr_OVA view=COVN

      track	RubWT-4hr_OVA-3.ND
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      color	0,0,204
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      subGroups	genotype=RubWT treatment=4hr_OVA view=COVN

      track	RubWT-30min_apopJC-1.ND
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      subGroups	genotype=RubWT treatment=30min_apopJC view=COVN

      track	RubWT-30min_apopJC-2.ND
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      subGroups	genotype=RubWT treatment=30min_apopJC view=COVN

      track	RubWT-30min_apopJC-3.ND
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      subGroups	genotype=RubWT treatment=30min_apopJC view=COVN

      track	RubWT-4hr_apopJC-1.ND
      parent	PS_tracksViewDepthN on
      bigDataUrl	DATA/RubWT-4hr_apopJC-1.depthNorm-Batch1.bw
      shortLabel	RubWT-4hr_apopJC-1
      longLabel	normalized read depth: RubWT-4hr_apopJC-1
      type	bigWig
      color	0,0,204
      priority	163
      visibility	hide
      subGroups	genotype=RubWT treatment=4hr_apopJC view=COVN

      track	RubWT-4hr_apopJC-2.ND
      parent	PS_tracksViewDepthN on
      bigDataUrl	DATA/RubWT-4hr_apopJC-2.depthNorm-Batch1.bw
      shortLabel	RubWT-4hr_apopJC-2
      longLabel	normalized read depth: RubWT-4hr_apopJC-2
      type	bigWig
      color	0,0,204
      priority	164
      visibility	hide
      subGroups	genotype=RubWT treatment=4hr_apopJC view=COVN

      track	RubWT-4hr_apopJC-3.ND
      parent	PS_tracksViewDepthN on
      bigDataUrl	DATA/RubWT-4hr_apopJC-3.depthNorm-Batch1.bw
      shortLabel	RubWT-4hr_apopJC-3
      longLabel	normalized read depth: RubWT-4hr_apopJC-3
      type	bigWig
      color	0,0,204
      priority	165
      visibility	hide
      subGroups	genotype=RubWT treatment=4hr_apopJC view=COVN

      track	RubKO-notxt-1.ND
      parent	PS_tracksViewDepthN on
      bigDataUrl	DATA/RubKO-notxt-1.depthNorm-Batch1.bw
      shortLabel	RubKO-notxt-1
      longLabel	normalized read depth: RubKO-notxt-1
      type	bigWig
      color	0,0,204
      priority	166
      visibility	hide
      subGroups	genotype=RubKO treatment=notxt view=COVN

      track	RubKO-notxt-2.ND
      parent	PS_tracksViewDepthN on
      bigDataUrl	DATA/RubKO-notxt-2.depthNorm-Batch1.bw
      shortLabel	RubKO-notxt-2
      longLabel	normalized read depth: RubKO-notxt-2
      type	bigWig
      color	0,0,204
      priority	167
      visibility	hide
      subGroups	genotype=RubKO treatment=notxt view=COVN

      track	RubKO-notxt-3.ND
      parent	PS_tracksViewDepthN on
      bigDataUrl	DATA/RubKO-notxt-3.depthNorm-Batch1.bw
      shortLabel	RubKO-notxt-3
      longLabel	normalized read depth: RubKO-notxt-3
      type	bigWig
      color	0,0,204
      priority	168
      visibility	hide
      subGroups	genotype=RubKO treatment=notxt view=COVN

      track	RubKO-30min_OVA-1.ND
      parent	PS_tracksViewDepthN on
      bigDataUrl	DATA/RubKO-30min_OVA-1.depthNorm-Batch1.bw
      shortLabel	RubKO-30min_OVA-1
      longLabel	normalized read depth: RubKO-30min_OVA-1
      type	bigWig
      color	0,0,204
      priority	169
      visibility	hide
      subGroups	genotype=RubKO treatment=30min_OVA view=COVN

      track	RubKO-30min_OVA-2.ND
      parent	PS_tracksViewDepthN on
      bigDataUrl	DATA/RubKO-30min_OVA-2.depthNorm-Batch1.bw
      shortLabel	RubKO-30min_OVA-2
      longLabel	normalized read depth: RubKO-30min_OVA-2
      type	bigWig
      color	0,0,204
      priority	170
      visibility	hide
      subGroups	genotype=RubKO treatment=30min_OVA view=COVN

      track	RubKO-30min_OVA-3.ND
      parent	PS_tracksViewDepthN on
      bigDataUrl	DATA/RubKO-30min_OVA-3.depthNorm-Batch1.bw
      shortLabel	RubKO-30min_OVA-3
      longLabel	normalized read depth: RubKO-30min_OVA-3
      type	bigWig
      color	0,0,204
      priority	171
      visibility	hide
      subGroups	genotype=RubKO treatment=30min_OVA view=COVN

      track	RubKO-4hr_OVA-1.ND
      parent	PS_tracksViewDepthN on
      bigDataUrl	DATA/RubKO-4hr_OVA-1.depthNorm-Batch1.bw
      shortLabel	RubKO-4hr_OVA-1
      longLabel	normalized read depth: RubKO-4hr_OVA-1
      type	bigWig
      color	0,0,204
      priority	172
      visibility	hide
      subGroups	genotype=RubKO treatment=4hr_OVA view=COVN

      track	RubKO-4hr_OVA-2.ND
      parent	PS_tracksViewDepthN on
      bigDataUrl	DATA/RubKO-4hr_OVA-2.depthNorm-Batch1.bw
      shortLabel	RubKO-4hr_OVA-2
      longLabel	normalized read depth: RubKO-4hr_OVA-2
      type	bigWig
      color	0,0,204
      priority	173
      visibility	hide
      subGroups	genotype=RubKO treatment=4hr_OVA view=COVN

      track	RubKO-4hr_OVA-3.ND
      parent	PS_tracksViewDepthN on
      bigDataUrl	DATA/RubKO-4hr_OVA-3.depthNorm-Batch1.bw
      shortLabel	RubKO-4hr_OVA-3
      longLabel	normalized read depth: RubKO-4hr_OVA-3
      type	bigWig
      color	0,0,204
      priority	174
      visibility	hide
      subGroups	genotype=RubKO treatment=4hr_OVA view=COVN

      track	RubKO-30min_apopJC-1.ND
      parent	PS_tracksViewDepthN on
      bigDataUrl	DATA/RubKO-30min_apopJC-1.depthNorm-Batch1.bw
      shortLabel	RubKO-30min_apopJC-1
      longLabel	normalized read depth: RubKO-30min_apopJC-1
      type	bigWig
      color	0,0,204
      priority	175
      visibility	hide
      subGroups	genotype=RubKO treatment=30min_apopJC view=COVN

      track	RubKO-30min_apopJC-2.ND
      parent	PS_tracksViewDepthN on
      bigDataUrl	DATA/RubKO-30min_apopJC-2.depthNorm-Batch1.bw
      shortLabel	RubKO-30min_apopJC-2
      longLabel	normalized read depth: RubKO-30min_apopJC-2
      type	bigWig
      color	0,0,204
      priority	176
      visibility	hide
      subGroups	genotype=RubKO treatment=30min_apopJC view=COVN

      track	RubKO-30min_apopJC-3.ND
      parent	PS_tracksViewDepthN on
      bigDataUrl	DATA/RubKO-30min_apopJC-3.depthNorm-Batch1.bw
      shortLabel	RubKO-30min_apopJC-3
      longLabel	normalized read depth: RubKO-30min_apopJC-3
      type	bigWig
      color	0,0,204
      priority	177
      visibility	hide
      subGroups	genotype=RubKO treatment=30min_apopJC view=COVN

      track	RubKO-4hr_apopJC-1.ND
      parent	PS_tracksViewDepthN on
      bigDataUrl	DATA/RubKO-4hr_apopJC-1.depthNorm-Batch1.bw
      shortLabel	RubKO-4hr_apopJC-1
      longLabel	normalized read depth: RubKO-4hr_apopJC-1
      type	bigWig
      color	0,0,204
      priority	178
      visibility	hide
      subGroups	genotype=RubKO treatment=4hr_apopJC view=COVN

      track	RubKO-4hr_apopJC-2.ND
      parent	PS_tracksViewDepthN on
      bigDataUrl	DATA/RubKO-4hr_apopJC-2.depthNorm-Batch1.bw
      shortLabel	RubKO-4hr_apopJC-2
      longLabel	normalized read depth: RubKO-4hr_apopJC-2
      type	bigWig
      color	0,0,204
      priority	179
      visibility	hide
      subGroups	genotype=RubKO treatment=4hr_apopJC view=COVN

      track	RubKO-4hr_apopJC-3.ND
      parent	PS_tracksViewDepthN on
      bigDataUrl	DATA/RubKO-4hr_apopJC-3.depthNorm-Batch1.bw
      shortLabel	RubKO-4hr_apopJC-3
      longLabel	normalized read depth: RubKO-4hr_apopJC-3
      type	bigWig
      color	0,0,204
      priority	180
      visibility	hide
      subGroups	genotype=RubKO treatment=4hr_apopJC view=COVN