## NG-108 RNAseq DoubleKO track patialRnaseqDKONG108Set compositeTrack on shortLabel Patial DoubleKO RNAseq longLabel Patial DoubleKO RNAseq project NG-108 priority 630 visibility full subGroup1 view Views \ COV=Coverage \ JUNC=Junction subGroup2 treatment Treatment \ DoubleKO=DoubleKO \ WT_NG108=WT_NG108 subGroup3 content Data_Content \ REP=Replicates \ UNION=Union subGroup4 replicate Replicate \ r1=r1 \ r2=r2 \ r3=r3 \ r4=r4 \ union=union dimensions dimX=treatment dimY=content sortOrder treatment=- replicate=+ content=+ view=+ type bed 3 configurable on ## Views track for NG-108 RNAseq, coverage data track patialRnaseqDKONG108View1 parent patialRnaseqDKONG108Set shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 viewUi on ## RNAseq data coverage tracks ## NG108_WT replicate 1 track WT_NG108_r1 parent patialRnaseqDKONG108View1 on bigDataUrl A_ES594_1.sanger.sickle.topHat2pe_mm10.bw shortLabel RNAseq WT_NG108_r1 longLabel RNAseq WT_NG108_r1 type bigWig color 191,134,96 priority 636 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG108 content=REP view=COV replicate=r1 ## NG108_WT replicate 2 track WT_NG108_r2 parent patialRnaseqDKONG108View1 on bigDataUrl A_ES595_1.sanger.sickle.topHat2pe_mm10.bw shortLabel RNAseq WT_NG108_r2 longLabel RNAseq WT_NG108_r2 type bigWig color 191,134,96 priority 637 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG108 content=REP view=COV replicate=r2 ## NG108_WT replicate 3 track WT_NG108_r3 parent patialRnaseqDKONG108View1 on bigDataUrl A_ES596_1.sanger.sickle.topHat2pe_mm10.bw shortLabel RNAseq WT_NG108_r3 longLabel RNAseq WT_NG108_r3 type bigWig color 191,134,96 priority 638 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG108 content=REP view=COV replicate=r3 ## NG108_WT replicate 4 track WT_NG108_r4 parent patialRnaseqDKONG108View1 on bigDataUrl A_ES597_1.sanger.sickle.topHat2pe_mm10.bw shortLabel RNAseq WT_NG108_r4 longLabel RNAseq WT_NG108_r4 type bigWig color 191,134,96 priority 639 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG108 content=REP view=COV replicate=r4 ## DoubleKO replicate 1 track DoubleKO_r1 parent patialRnaseqDKONG108View1 on bigDataUrl ES598_1.sanger.sickle.topHat2pe_mm10.bw shortLabel RNAseq DoubleKO_r1 longLabel RNAseq DoubleKO_r1 type bigWig color 250,100,0 priority 641 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=DoubleKO content=REP view=COV replicate=r1 ## DoubleKO replicate 2 track DoubleKO_r2 parent patialRnaseqDKONG108View1 on bigDataUrl ES600_1.sanger.sickle.topHat2pe_mm10.bw shortLabel RNAseq DoubleKO_r2 longLabel RNAseq DoubleKO_r2 type bigWig color 250,100,0 priority 642 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=DoubleKO content=REP view=COV replicate=r2 ## DoubleKO replicate 3 track DoubleKO_r3 parent patialRnaseqDKONG108View1 on bigDataUrl ES628_1.sanger.sickle.topHat2pe_mm10.bw shortLabel RNAseq DoubleKO_r3 longLabel RNAseq DoubleKO_r3 type bigWig color 250,100,0 priority 643 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=DoubleKO content=REP view=COV replicate=r3 ## DoubleKO replicate 4 track DoubleKO_r4 parent patialRnaseqDKONG108View1 on bigDataUrl ES629_1.sanger.sickle.topHat2pe_mm10.bw shortLabel RNAseq DoubleKO_r4 longLabel RNAseq DoubleKO_r4 type bigWig color 250,100,0 priority 644 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=DoubleKO content=REP view=COV replicate=r4 ## RNAseq data coverage track union ## DoubleKO union coverage track DoubleKO_union parent patialRnaseqDKONG108View1 on bigDataUrl DoubleKO_union.TopHat2pe_mm10.bw shortLabel RNAseq DoubleKO longLabel RNAseq DoubleKO type bigWig color 250,100,0 priority 640 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on autoScale on viewLimits 0:200 visibility full subGroups treatment=DoubleKO content=UNION view=COV replicate=union ## WT_NG108 union coverage track WT_NG108_union parent patialRnaseqDKONG108View1 on bigDataUrl NG108_WT_union.TopHat2pe_mm10.bw shortLabel RNAseq WT_NG108 longLabel RNAseq WT_NG108 type bigWig color 191,134,96 priority 635 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on autoScale on viewLimits 0:200 visibility full subGroups treatment=WT_NG108 content=UNION view=COV replicate=union ## Views track for NG-108 RNAseq, junctions data track patialRnaseqDKONG108View2 parent patialRnaseqDKONG108Set shortLabel RNAseq_junctions_NG-108 view JUNC visibility pack type bigBed 12 allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on scoreFilter 20 scoreFilterLimits 1:1000 viewUi on # DoubleKO junctions track DoubleKO_r1_junc parent patialRnaseqDKONG108View2 on bigDataUrl ES598_1.sanger.sickle.topHat2pe_mm10.bam.TopHat2_mm10.sortedNamed.bb shortLabel TopHat2 junctions DoubleKO_r1 longLabel TopHat2 junctions DoubleKO_r1 type bigBed 12 color 250,100,0 visibility hide priority 651 subGroups treatment=DoubleKO content=REP view=JUNC replicate=r1 # DoubleKO junctions track DoubleKO_r2_junc parent patialRnaseqDKONG108View2 on bigDataUrl ES600_1.sanger.sickle.topHat2pe_mm10.bam.TopHat2_mm10.sortedNamed.bb shortLabel TopHat2 junctions DoubleKO_r2 longLabel TopHat2 junctions DoubleKO_r2 type bigBed 12 color 250,100,0 visibility hide priority 652 subGroups treatment=DoubleKO content=REP view=JUNC replicate=r2 # DoubleKO junctions track DoubleKO_r3_junc parent patialRnaseqDKONG108View2 on bigDataUrl ES628_1.sanger.sickle.topHat2pe_mm10.bam.TopHat2_mm10.sortedNamed.bb shortLabel TopHat2 junctions DoubleKO_r3 longLabel TopHat2 junctions DoubleKO_r3 type bigBed 12 color 250,100,0 visibility hide priority 653 subGroups treatment=DoubleKO content=REP view=JUNC replicate=r3 # DoubleKO junctions track DoubleKO_r4_junc parent patialRnaseqDKONG108View2 on bigDataUrl ES629_1.sanger.sickle.topHat2pe_mm10.bam.TopHat2_mm10.sortedNamed.bb shortLabel TopHat2 junctions DoubleKO_r4 longLabel TopHat2 junctions DoubleKO_r4 type bigBed 12 color 250,100,0 visibility hide priority 654 subGroups treatment=DoubleKO content=REP view=JUNC replicate=r4 # NG108_WT junctions track WT_NG108_r1_junc parent patialRnaseqDKONG108View2 on bigDataUrl ES594_1.sanger.sickle.topHat2pe_mm10.bam.TopHat2_mm10.sortedNamed.bb shortLabel TopHat2 junctions WT_NG108_r1 longLabel TopHat2 junctions WT_NG108_r1 type bigBed 12 color 191,134,96 visibility hide priority 656 subGroups treatment=WT_NG108 content=REP view=JUNC replicate=r1 # NG108_WT junctions track WT_NG108_r2_junc parent patialRnaseqDKONG108View2 on bigDataUrl ES595_1.sanger.sickle.topHat2pe_mm10.bam.TopHat2_mm10.sortedNamed.bb shortLabel TopHat2 junctions WT_NG108_r2 longLabel TopHat2 junctions WT_NG108_r2 type bigBed 12 color 191,134,96 visibility hide priority 657 subGroups treatment=WT_NG108 content=REP view=JUNC replicate=r2 # NG108_WT junctions track WT_NG108_r3_junc parent patialRnaseqDKONG108View2 on bigDataUrl ES596_1.sanger.sickle.topHat2pe_mm10.bam.TopHat2_mm10.sortedNamed.bb shortLabel TopHat2 junctions WT_NG108_r3 longLabel TopHat2 junctions WT_NG108_r3 type bigBed 12 color 191,134,96 visibility hide priority 658 subGroups treatment=WT_NG108 content=REP view=JUNC replicate=r3 # NG108_WT junctions track WT_NG108_r4_junc parent patialRnaseqDKONG108View2 on bigDataUrl ES597_1.sanger.sickle.topHat2pe_mm10.bam.TopHat2_mm10.sortedNamed.bb shortLabel TopHat2 junctions WT_NG108_r4 longLabel TopHat2 junctions WT_NG108_r4 type bigBed 12 color 191,134,96 visibility hide priority 659 subGroups treatment=WT_NG108 content=REP view=JUNC replicate=r4 # DoubleKO combined junctions track DoubleKO_junc parent patialRnaseqDKONG108View2 on bigDataUrl DoubleKO_NG108.TopHat2_mm10.combinedJunctions.bb shortLabel TopHat2 junctions DoubleKO longLabel TopHat2 junctions DoubleKO type bigBed 12 visibility pack priority 650 #spectrum on scoreMin 10 scoreMax 100 color 250,100,0 subGroups treatment=DoubleKO content=UNION view=JUNC replicate=union # WT_NG108 combined junctions track WT_NG108_junc parent patialRnaseqDKONG108View2 on bigDataUrl WT_NG108.TopHat2_mm10.combinedJunctions.bb shortLabel TopHat2 junctions WT_NG108 longLabel TopHat2 junctions WT_NG108 type bigBed 12 visibility pack priority 650 #spectrum on scoreMin 10 scoreMax 100 color 191,134,96 subGroups treatment=WT_NG108 content=UNION view=JUNC replicate=union ## NG-66 RNAseq TripleKO track patialRnaseqTKONG66Set compositeTrack on shortLabel Patial TripleKO RNAseq longLabel Patial TripleKO RNAseq project NG-66 priority 730 visibility full subGroup1 view Views \ COV=Coverage \ JUNC=Junction subGroup2 treatment Treatment \ TripleKO=TripleKO \ WT_NG66=WT_NG66 subGroup3 content Data_Content \ REP=Replicates \ UNION=Union subGroup4 replicate Replicate \ r1=r1 \ r2=r2 \ r3=r3 \ r4=r4 \ union=union dimensions dimX=treatment dimY=content sortOrder treatment=- replicate=+ content=+ view=+ type bed 3 configurable on ## Views track for NG-66 RNAseq, coverage data track patialRnaseqTKONG66View1 parent patialRnaseqTKONG66Set shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 viewUi on ## RNAseq data coverage tracks ## TripleKO replicate 1 track TripleKO_r1 parent patialRnaseqTKONG66View1 on bigDataUrl ES337_merged.topHat2pe.bw shortLabel RNAseq TripleKO_r1 longLabel RNAseq TripleKO_r1 type bigWig color 175,33,33 priority 741 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=TripleKO content=REP view=COV replicate=r1 ## TripleKO replicate 2 track TripleKO_r2 parent patialRnaseqTKONG66View1 on bigDataUrl ES338_merged.topHat2pe.bw shortLabel RNAseq TripleKO_r2 longLabel RNAseq TripleKO_r2 type bigWig color 175,33,33 priority 742 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=TripleKO content=REP view=COV replicate=r2 ## TripleKO replicate 3 track TripleKO_r3 parent patialRnaseqTKONG66View1 on bigDataUrl ES339_merged.topHat2pe.bw shortLabel RNAseq TripleKO_r3 longLabel RNAseq TripleKO_r3 type bigWig color 175,33,33 priority 743 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=TripleKO content=REP view=COV replicate=r3 ## TripleKO replicate 4 track TripleKO_r4 parent patialRnaseqTKONG66View1 on bigDataUrl ES340_merged.topHat2pe.bw shortLabel RNAseq TripleKO_r4 longLabel RNAseq TripleKO_r4 type bigWig color 175,33,33 priority 744 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=TripleKO content=REP view=COV replicate=r4 ## NG66_WT replicate 1 track WT_NG66_r1 parent patialRnaseqTKONG66View1 on bigDataUrl ES333_merged.topHat2pe.bw shortLabel RNAseq WT_NG66_r1 longLabel RNAseq WT_NG66_r1 type bigWig color 166,108,108 priority 736 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG66 content=REP view=COV replicate=r1 ## NG66_WT replicate 2 track WT_NG66_r2 parent patialRnaseqTKONG66View1 on bigDataUrl ES334_merged.topHat2pe.bw shortLabel RNAseq WT_NG66_r2 longLabel RNAseq WT_NG66_r2 type bigWig color 166,108,108 priority 737 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG66 content=REP view=COV replicate=r2 ## NG66_WT replicate 3 track WT_NG66_r3 parent patialRnaseqTKONG66View1 on bigDataUrl ES335_merged.topHat2pe.bw shortLabel RNAseq WT_NG66_r3 longLabel RNAseq WT_NG66_r3 type bigWig color 166,108,108 priority 738 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG66 content=REP view=COV replicate=r3 ## NG66_WT replicate 4 track WT_NG66_r4 parent patialRnaseqTKONG66View1 on bigDataUrl ES336_merged.topHat2pe.bw shortLabel RNAseq WT_NG66_r4 longLabel RNAseq WT_NG66_r4 type bigWig color 166,108,108 priority 739 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG66 content=REP view=COV replicate=r4 ## RNAseq data coverage track union ## TripleKO union coverage track TripleKO_union parent patialRnaseqTKONG66View1 on bigDataUrl TripleKO_union.TopHat2pe_mm10.bw shortLabel RNAseq TripleKO longLabel RNAseq TripleKO type bigWig color 175,33,33 priority 740 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on autoScale on viewLimits 0:200 visibility full subGroups treatment=TripleKO content=UNION view=COV replicate=union ## WT_NG66 union coverage track WT_NG66_union parent patialRnaseqTKONG66View1 on bigDataUrl NG66_WT_union.TopHat2pe_mm10.bw shortLabel RNAseq WT_NG66 longLabel RNAseq WT_NG66 type bigWig color 166,108,108 priority 735 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on autoScale on viewLimits 0:200 visibility full subGroups treatment=WT_NG66 content=UNION view=COV replicate=union ## Views track for NG-66 RNAseq, junctions data track patialRnaseqTKONG66View2 parent patialRnaseqTKONG66Set shortLabel RNAseq_junctions_NG-66 view JUNC visibility pack type bigBed 12 allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on scoreFilter 20 scoreFilterLimits 1:1000 viewUi on # TripleKO junctions track TripleKO_r1_junc parent patialRnaseqTKONG66View2 on bigDataUrl ES337-4_1.sanger.sickle.topHat2pe_mm10.bam.TopHat2_mm10.sortedNamed.bb shortLabel TopHat2 junctions TripleKO_r1 longLabel TopHat2 junctions TripleKO_r1 type bigBed 12 color 175,33,33 visibility hide priority 1751 subGroups treatment=TripleKO content=REP view=JUNC replicate=r1 # TripleKO junctions track TripleKO_r2_junc parent patialRnaseqTKONG66View2 on bigDataUrl ES338-4_1.sanger.sickle.topHat2pe_mm10.bam.TopHat2_mm10.sortedNamed.bb shortLabel TopHat2 junctions TripleKO_r2 longLabel TopHat2 junctions TripleKO_r2 type bigBed 12 color 175,33,33 visibility hide priority 1752 subGroups treatment=TripleKO content=REP view=JUNC replicate=r2 # TripleKO junctions track TripleKO_r3_junc parent patialRnaseqTKONG66View2 on bigDataUrl ES339-4_1.sanger.sickle.topHat2pe_mm10.bam.TopHat2_mm10.sortedNamed.bb shortLabel TopHat2 junctions TripleKO_r3 longLabel TopHat2 junctions TripleKO_r3 type bigBed 12 color 175,33,33 visibility hide priority 1753 subGroups treatment=TripleKO content=REP view=JUNC replicate=r3 # TripleKO junctions track TripleKO_r4_junc parent patialRnaseqTKONG66View2 on bigDataUrl ES340-4_1.sanger.sickle.topHat2pe_mm10.bam.TopHat2_mm10.sortedNamed.bb shortLabel TopHat2 junctions TripleKO_r4 longLabel TopHat2 junctions TripleKO_r4 type bigBed 12 color 175,33,33 visibility hide priority 1754 subGroups treatment=TripleKO content=REP view=JUNC replicate=r4 # NG66_WT junctions track WT_NG66_r1_junc parent patialRnaseqTKONG66View2 on bigDataUrl ES333_1.sickle.merged.topHat2pe_mm10.combinedJunctions.sorted.bb shortLabel TopHat2 junctions WT_NG66_r1 longLabel TopHat2 junctions WT_NG66_r1 type bigBed 12 color 166,108,108 visibility hide priority 1756 subGroups treatment=WT_NG66 content=REP view=JUNC replicate=r1 # NG66_WT junctions track WT_NG66_r2_junc parent patialRnaseqTKONG66View2 on bigDataUrl ES334_1.sickle.merged.topHat2pe_mm10.combinedJunctions.sorted.bb shortLabel TopHat2 junctions WT_NG66_r2 longLabel TopHat2 junctions WT_NG66_r2 type bigBed 12 color 166,108,108 visibility hide priority 1757 subGroups treatment=WT_NG66 content=REP view=JUNC replicate=r2 # NG66_WT junctions track WT_NG66_r3_junc parent patialRnaseqTKONG66View2 on bigDataUrl ES335_1.sickle.merged.topHat2pe_mm10.combinedJunctions.sorted.bb shortLabel TopHat2 junctions WT_NG66_r3 longLabel TopHat2 junctions WT_NG66_r3 type bigBed 12 color 166,108,108 visibility hide priority 1758 subGroups treatment=WT_NG66 content=REP view=JUNC replicate=r3 # NG66_WT junctions track WT_NG66_r4_junc parent patialRnaseqTKONG66View2 on bigDataUrl ES336_1.sickle.merged.topHat2pe_mm10.combinedJunctions.sorted.bb shortLabel TopHat2 junctions WT_NG66_r4 longLabel TopHat2 junctions WT_NG66_r4 type bigBed 12 color 166,108,108 visibility hide priority 1759 subGroups treatment=WT_NG66 content=REP view=JUNC replicate=r4 # TripleKO combined junctions track TripleKO_junc parent patialRnaseqTKONG66View2 on bigDataUrl TripleKO_NG66.TopHat2_mm10.combinedJunctions.bb shortLabel TopHat2 junctions TripleKO longLabel TopHat2 junctions TripleKO type bigBed 12 visibility pack priority 1750 #spectrum on scoreMin 10 scoreMax 100 color 175,33,33 subGroups treatment=TripleKO content=UNION view=JUNC replicate=union # WT_NG66 combined junctions track WT_NG66_junc parent patialRnaseqTKONG66View2 on bigDataUrl WT_NG66.TopHat2_mm10.combinedJunctions.bb shortLabel TopHat2 junctions WT_NG66 longLabel TopHat2 junctions WT_NG66 type bigBed 12 visibility pack priority 1750 #spectrum on scoreMin 10 scoreMax 100 color 166,108,108 subGroups treatment=WT_NG66 content=UNION view=JUNC replicate=union ## NG-101 RNAseq TTPdelARE track patialRnaseqARENG101Set compositeTrack on shortLabel Patial TTPdelARE RNAseq longLabel Patial TTPdelARE RNAseq project NG-101 priority 930 visibility full subGroup1 view Views \ COV=Coverage \ JUNC=Junction subGroup2 treatment Treatment \ TTPdelARE=TTPdelARE \ WT_NG101=WT_NG101 subGroup3 content Data_Content \ REP=Replicates \ UNION=Union subGroup4 replicate Replicate \ r1=r1 \ r2=r2 \ r3=r3 \ r4=r4 \ union=union dimensions dimX=treatment dimY=content sortOrder treatment=- replicate=+ content=+ view=+ type bed 3 configurable on ## Views track for NG-101 RNAseq, coverage data track patialRnaseqARENG101View1 parent patialRnaseqARENG101Set shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 viewUi on ## RNAseq data coverage tracks ## TTPdelARE replicate 1 track TTPdelARE_r1 parent patialRnaseqARENG101View1 on bigDataUrl ES536_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq TTPdelARE_r1 longLabel RNAseq TTPdelARE_r1 type bigWig color 90,50,140 priority 931 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=TTPdelARE content=REP view=COV replicate=r1 ## TTPdelARE replicate 2 track TTPdelARE_r2 parent patialRnaseqARENG101View1 on bigDataUrl ES537_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq TTPdelARE_r2 longLabel RNAseq TTPdelARE_r2 type bigWig color 90,50,140 priority 932 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=TTPdelARE content=REP view=COV replicate=r2 ## TTPdelARE replicate 3 track TTPdelARE_r3 parent patialRnaseqARENG101View1 on bigDataUrl ES538_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq TTPdelARE_r3 longLabel RNAseq TTPdelARE_r3 type bigWig color 90,50,140 priority 933 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=TTPdelARE content=REP view=COV replicate=r3 ## TTPdelARE replicate 4 track TTPdelARE_r4 parent patialRnaseqARENG101View1 on bigDataUrl ES539_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq TTPdelARE_r4 longLabel RNAseq TTPdelARE_r4 type bigWig color 90,50,140 priority 934 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=TTPdelARE content=REP view=COV replicate=r4 ## NG101_WT replicate 1 track WT_NG101_r1 parent patialRnaseqARENG101View1 on bigDataUrl ES532_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq WT_NG101_r1 longLabel RNAseq WT_NG101_r1 type bigWig color 132,115,153 priority 936 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG101 content=REP view=COV replicate=r1 ## NG101_WT replicate 2 track WT_NG101_r2 parent patialRnaseqARENG101View1 on bigDataUrl ES533_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq WT_NG101_r2 longLabel RNAseq WT_NG101_r2 type bigWig color 132,115,153 priority 937 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG101 content=REP view=COV replicate=r2 ## NG101_WT replicate 3 track WT_NG101_r3 parent patialRnaseqARENG101View1 on bigDataUrl ES534_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq WT_NG101_r3 longLabel RNAseq WT_NG101_r3 type bigWig color 132,115,153 priority 938 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG101 content=REP view=COV replicate=r3 ## NG101_WT replicate 4 track WT_NG101_r4 parent patialRnaseqARENG101View1 on bigDataUrl ES535_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq WT_NG101_r4 longLabel RNAseq WT_NG101_r4 type bigWig color 132,115,153 priority 939 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG101 content=REP view=COV replicate=r4 ## RNAseq data coverage track union ## TTPdelARE union coverage track TTPdelARE_union parent patialRnaseqARENG101View1 on bigDataUrl TTPdelARE_union.TopHat2pe_mm10.bw shortLabel RNAseq TTPdelARE longLabel RNAseq TTPdelARE type bigWig color 90,50,140 priority 930 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on autoScale on viewLimits 0:200 visibility full subGroups treatment=TTPdelARE content=UNION view=COV replicate=union ## WT_NG101 union coverage track WT_NG101_union parent patialRnaseqARENG101View1 on bigDataUrl NG101_WT_union.TopHat2pe_mm10.bw shortLabel RNAseq WT_NG101 longLabel RNAseq WT_NG101 type bigWig color 132,115,153 priority 935 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on autoScale on viewLimits 0:200 visibility full subGroups treatment=WT_NG101 content=UNION view=COV replicate=union ## Views track for NG-101 RNAseq, junctions data track patialRnaseqARENG101View2 parent patialRnaseqARENG101Set shortLabel RNAseq_junctions_NG-101 view JUNC visibility pack type bigBed 12 allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on scoreFilter 20 scoreFilterLimits 1:1000 viewUi on # TTPdelARE junctions track TTPdelARE_r1_junc parent patialRnaseqARENG101View2 on bigDataUrl ES536_1.sickle.merged.topHat2pe_mm10.sortedNamed.bb shortLabel TopHat2 junctions TTPdelARE_r1 longLabel TopHat2 junctions TTPdelARE_r1 type bigBed 12 color 90,50,140 visibility hide priority 951 subGroups treatment=TTPdelARE content=REP view=JUNC replicate=r1 # TTPdelARE junctions track TTPdelARE_r2_junc parent patialRnaseqARENG101View2 on bigDataUrl ES537_1.sickle.merged.topHat2pe_mm10.sortedNamed.bb shortLabel TopHat2 junctions TTPdelARE_r2 longLabel TopHat2 junctions TTPdelARE_r2 type bigBed 12 color 90,50,140 visibility hide priority 952 subGroups treatment=TTPdelARE content=REP view=JUNC replicate=r2 # TTPdelARE junctions track TTPdelARE_r3_junc parent patialRnaseqARENG101View2 on bigDataUrl ES538_1.sickle.merged.topHat2pe_mm10.sortedNamed.bb shortLabel TopHat2 junctions TTPdelARE_r3 longLabel TopHat2 junctions TTPdelARE_r3 type bigBed 12 color 90,50,140 visibility hide priority 953 subGroups treatment=TTPdelARE content=REP view=JUNC replicate=r3 # TTPdelARE junctions track TTPdelARE_r4_junc parent patialRnaseqARENG101View2 on bigDataUrl ES539_1.sickle.merged.topHat2pe_mm10.sortedNamed.bb shortLabel TopHat2 junctions TTPdelARE_r4 longLabel TopHat2 junctions TTPdelARE_r4 type bigBed 12 color 90,50,140 visibility hide priority 954 subGroups treatment=TTPdelARE content=REP view=JUNC replicate=r4 # NG101_WT junctions track WT_NG101_r1_junc parent patialRnaseqARENG101View2 on bigDataUrl ES532_1.sickle.merged.topHat2pe_mm10.sortedNamed.bb shortLabel TopHat2 junctions WT_NG101_r1 longLabel TopHat2 junctions WT_NG101_r1 type bigBed 12 color 132,115,153 visibility hide priority 956 subGroups treatment=WT_NG101 content=REP view=JUNC replicate=r1 # NG101_WT junctions track WT_NG101_r2_junc parent patialRnaseqARENG101View2 on bigDataUrl ES533_1.sickle.merged.topHat2pe_mm10.sortedNamed.bb shortLabel TopHat2 junctions WT_NG101_r2 longLabel TopHat2 junctions WT_NG101_r2 type bigBed 12 color 132,115,153 visibility hide priority 957 subGroups treatment=WT_NG101 content=REP view=JUNC replicate=r2 # NG101_WT junctions track WT_NG101_r3_junc parent patialRnaseqARENG101View2 on bigDataUrl ES534_1.sickle.merged.topHat2pe_mm10.sortedNamed.bb shortLabel TopHat2 junctions WT_NG101_r3 longLabel TopHat2 junctions WT_NG101_r3 type bigBed 12 color 132,115,153 visibility hide priority 958 subGroups treatment=WT_NG101 content=REP view=JUNC replicate=r3 # NG101_WT junctions track WT_NG101_r4_junc parent patialRnaseqARENG101View2 on bigDataUrl ES535_1.sickle.merged.topHat2pe_mm10.sortedNamed.bb shortLabel TopHat2 junctions WT_NG101_r4 longLabel TopHat2 junctions WT_NG101_r4 type bigBed 12 color 132,115,153 visibility hide priority 959 subGroups treatment=WT_NG101 content=REP view=JUNC replicate=r4 # TTPdelARE combined junctions track TTPdelARE_junc parent patialRnaseqARENG101View2 on bigDataUrl TC_TTPdelARE.TopHat2_mm10.combinedJunctions.bb shortLabel TopHat2 junctions TTPdelARE longLabel TopHat2 junctions TTPdelARE type bigBed 12 visibility pack priority 960 #spectrum on scoreMin 10 scoreMax 100 color 90,50,140 subGroups treatment=TTPdelARE content=UNION view=JUNC replicate=union # WT_NG101 combined junctions track WT_NG101_junc parent patialRnaseqARENG101View2 on bigDataUrl TC_WT.TopHat2_mm10.combinedJunctions.bb shortLabel TopHat2 junctions WT_NG101 longLabel TopHat2 junctions WT_NG101 type bigBed 12 visibility pack priority 961 #spectrum on scoreMin 10 scoreMax 100 color 132,115,153 subGroups treatment=WT_NG101 content=UNION view=JUNC replicate=union ## NG-131 RNAseq Zfp36l2_HepKO track patialRnaseqHepKONG131Set compositeTrack on shortLabel Patial Zfp36l2_HepKO RNAseq longLabel Patial Zfp36l2_HepKO RNAseq project NG-131 priority 1030 visibility full subGroup1 view Views \ COV=Coverage \ JUNC=Junction subGroup2 treatment Treatment \ Zfp36l2_HepKO=Zfp36l2_HepKO \ WT_NG131=WT_NG131 subGroup3 content Data_Content \ REP=Replicates \ UNION=Union subGroup4 replicate Replicate \ r1=r1 \ r2=r2 \ r3=r3 \ r4=r4 \ union=union dimensions dimX=treatment dimY=content sortOrder treatment=+ replicate=+ content=+ view=+ type bed 3 configurable on ## Views track for NG-131 RNAseq, coverage data track patialRnaseqHepKONG131View1 parent patialRnaseqHepKONG131Set shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 viewUi on ## RNAseq data coverage tracks ## Zfp36l2_HepKO replicate 1 track Zfp36l2_HepKO_r1 parent patialRnaseqHepKONG131View1 on bigDataUrl ES786_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq Zfp36l2_HepKO_r1 longLabel RNAseq Zfp36l2_HepKO_r1 type bigWig color 31,83,5 priority 1031 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=Zfp36l2_HepKO content=REP view=COV replicate=r1 ## Zfp36l2_HepKO replicate 2 track Zfp36l2_HepKO_r2 parent patialRnaseqHepKONG131View1 on bigDataUrl ES787_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq Zfp36l2_HepKO_r2 longLabel RNAseq Zfp36l2_HepKO_r2 type bigWig color 31,83,5 priority 1032 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=Zfp36l2_HepKO content=REP view=COV replicate=r2 ## Zfp36l2_HepKO replicate 3 track Zfp36l2_HepKO_r3 parent patialRnaseqHepKONG131View1 on bigDataUrl ES788_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq Zfp36l2_HepKO_r3 longLabel RNAseq Zfp36l2_HepKO_r3 type bigWig color 31,83,5 priority 1033 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=Zfp36l2_HepKO content=REP view=COV replicate=r3 ## Zfp36l2_HepKO replicate 4 track Zfp36l2_HepKO_r4 parent patialRnaseqHepKONG131View1 on bigDataUrl ES789_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq Zfp36l2_HepKO_r4 longLabel RNAseq Zfp36l2_HepKO_r4 type bigWig color 31,83,5 priority 1034 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=Zfp36l2_HepKO content=REP view=COV replicate=r4 ## NG131_WT replicate 1 track WT_NG131_r1 parent patialRnaseqHepKONG131View1 on bigDataUrl ES782_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq WT_NG131_r1 longLabel RNAseq WT_NG131_r1 type bigWig color 115,128,108 priority 1036 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG131 content=REP view=COV replicate=r1 ## NG131_WT replicate 2 track WT_NG131_r2 parent patialRnaseqHepKONG131View1 on bigDataUrl ES783_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq WT_NG131_r2 longLabel RNAseq WT_NG131_r2 type bigWig color 115,128,108 priority 1037 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG131 content=REP view=COV replicate=r2 ## NG131_WT replicate 3 track WT_NG131_r3 parent patialRnaseqHepKONG131View1 on bigDataUrl ES784_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq WT_NG131_r3 longLabel RNAseq WT_NG131_r3 type bigWig color 115,128,108 priority 1038 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG131 content=REP view=COV replicate=r3 ## NG131_WT replicate 4 track WT_NG131_r4 parent patialRnaseqHepKONG131View1 on bigDataUrl ES785_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq WT_NG131_r4 longLabel RNAseq WT_NG131_r4 type bigWig color 115,128,108 priority 1039 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG131 content=REP view=COV replicate=r4 ## RNAseq data coverage track union ## Zfp36l2_HepKO union coverage track Zfp36l2_HepKO_union parent patialRnaseqHepKONG131View1 on bigDataUrl Zfp36l2_HepKO_union.TopHat2pe_mm10.bw shortLabel RNAseq Zfp36l2_HepKO longLabel RNAseq Zfp36l2_HepKO type bigWig color 31,83,5 priority 1030 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on autoScale on viewLimits 0:200 visibility full subGroups treatment=Zfp36l2_HepKO content=UNION view=COV replicate=union ## WT_NG131 union coverage track WT_NG131_union parent patialRnaseqHepKONG131View1 on bigDataUrl NG131_WT_union.TopHat2pe_mm10.bw shortLabel RNAseq WT_NG131 longLabel RNAseq WT_NG131 type bigWig color 115,128,108 priority 1035 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on autoScale on viewLimits 0:200 visibility full subGroups treatment=WT_NG131 content=UNION view=COV replicate=union ## Views track for NG-131 RNAseq, junctions data track patialRnaseqHepKONG131View2 parent patialRnaseqHepKONG131Set shortLabel RNAseq_junctions_NG-131 view JUNC visibility pack type bigBed 12 allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on scoreFilter 20 scoreFilterLimits 1:1000 viewUi on # Zfp36l2_HepKO combined junctions track Zfp36l2_HepKO_junc parent patialRnaseqHepKONG131View2 on bigDataUrl Zfp36l2_HepKO.TopHat2_mm10.combinedJunctions.bb shortLabel TopHat2 junctions Zfp36l2_HepKO longLabel TopHat2 junctions Zfp36l2_HepKO type bigBed 12 visibility pack priority 1050 #spectrum on scoreMin 10 scoreMax 100 color 31,83,5 subGroups treatment=Zfp36l2_HepKO content=UNION view=JUNC replicate=union # WT_NG131 combined junctions track WT_NG131_junc parent patialRnaseqHepKONG131View2 on bigDataUrl WT_NG131.TopHat2_mm10.combinedJunctions.bb shortLabel TopHat2 junctions WT_NG131 longLabel TopHat2 junctions WT_NG131 type bigBed 12 visibility pack priority 1050 #spectrum on scoreMin 10 scoreMax 100 color 115,128,108 subGroups treatment=WT_NG131 content=UNION view=JUNC replicate=union ## Beginning of track view track patialNG157 compositeTrack on shortLabel Patial TTPKO RNAseq NG157 longLabel Patial TTPKO RNAseq NG157 priority 1200 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ PEAK=Peaks \ JUNC=Junctions subGroup2 Group1 Group1 \ WT_NG157=WT_NG157 \ TTPKO=TTPKO subGroup3 Group2 Group2 \ replicates=replicates \ union=union subGroup4 Group3 Group3 \ r1=r1 \ r2=r2 \ r3=r3 \ r4=r4 \ union=union dimensions dimX=Group1 dimY=Group2 sortOrder Group1=+ Group2=+ Group3=+ view=+ ## Views track coverage data track patialNG157View1 parent patialNG157 shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track ES1240_coverage parent patialNG157View1 on bigDataUrl ES1240_1.sickle.merged.topHat2pe_mm10.bw shortLabel WT_NG157_replicates_r1 coverage longLabel WT_NG157_replicates_r1 coverage type bigWig color 149,177,186 priority 1202 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=WT_NG157 Group2=replicates Group3=r1 view=COV ## Coverage track track ES1241_coverage parent patialNG157View1 on bigDataUrl ES1241_1.sickle.merged.topHat2pe_mm10.bw shortLabel WT_NG157_replicates_r2 coverage longLabel WT_NG157_replicates_r2 coverage type bigWig color 149,177,186 priority 1204 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=WT_NG157 Group2=replicates Group3=r2 view=COV ## Coverage track track ES1242_coverage parent patialNG157View1 on bigDataUrl ES1242_1.sickle.merged.topHat2pe_mm10.bw shortLabel WT_NG157_replicates_r3 coverage longLabel WT_NG157_replicates_r3 coverage type bigWig color 149,177,186 priority 1206 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=WT_NG157 Group2=replicates Group3=r3 view=COV ## Coverage track track ES1243_coverage parent patialNG157View1 on bigDataUrl ES1243_1.sickle.merged.topHat2pe_mm10.bw shortLabel WT_NG157_replicates_r4 coverage longLabel WT_NG157_replicates_r4 coverage type bigWig color 149,177,186 priority 1208 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=WT_NG157 Group2=replicates Group3=r4 view=COV ## Coverage track track ES1244_coverage parent patialNG157View1 on bigDataUrl ES1244_1.sickle.merged.topHat2pe_mm10.bw shortLabel TTPKO_replicates_r1 coverage longLabel TTPKO_replicates_r1 coverage type bigWig color 0,103,137 priority 1210 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=TTPKO Group2=replicates Group3=r1 view=COV ## Coverage track track ES1245_coverage parent patialNG157View1 on bigDataUrl ES1245_1.sickle.merged.topHat2pe_mm10.bw shortLabel TTPKO_replicates_r2 coverage longLabel TTPKO_replicates_r2 coverage type bigWig color 0,103,137 priority 1212 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=TTPKO Group2=replicates Group3=r2 view=COV ## Coverage track track ES1246_coverage parent patialNG157View1 on bigDataUrl ES1246_1.sickle.merged.topHat2pe_mm10.bw shortLabel TTPKO_replicates_r3 coverage longLabel TTPKO_replicates_r3 coverage type bigWig color 0,103,137 priority 1214 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=TTPKO Group2=replicates Group3=r3 view=COV ## Coverage track track ES1247_coverage parent patialNG157View1 on bigDataUrl ES1247_1.sickle.merged.topHat2pe_mm10.bw shortLabel TTPKO_replicates_r4 coverage longLabel TTPKO_replicates_r4 coverage type bigWig color 0,103,137 priority 1216 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=TTPKO Group2=replicates Group3=r4 view=COV ## Coverage track track WT_coverage parent patialNG157View1 on bigDataUrl WT_NG157_union.TopHat2pe_mm10.bw shortLabel RNAseq WT_NG157 longLabel RNAseq WT_NG157 type bigWig color 149,177,186 priority 1218 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=WT_NG157 Group2=union Group3=union view=COV ## Coverage track track TTPKO_coverage parent patialNG157View1 on bigDataUrl TTPKO_union.TopHat2pe_mm10.bw shortLabel RNAseq TTPKO longLabel RNAseq TTPKO type bigWig color 0,103,137 priority 1220 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=TTPKO Group2=union Group3=union view=COV ## Views track for RNAseq, junctions data track patialNG157View2 parent patialNG157 shortLabel RNAseq_junctions view JUNC visibility pack type bigBed 12 allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on scoreFilter 20 scoreFilterLimits 1:1000 viewUi on # combined junctions track track WT_junctions parent patialNG157View2 on bigDataUrl WT_NG157.TopHat2_mm10.combinedJunctions.bb shortLabel WT_NG157_union_union junctions longLabel WT_NG157_union_union junctions type bigBed 12 visibility pack priority 1222 scoreMin 10 scoreMax 100 color 149,177,186 subGroups Group1=WT_NG157 Group2=union Group3=union view=JUNC # combined junctions track track TTPKO_junctions parent patialNG157View2 on bigDataUrl TTPKO_NG157.TopHat2_mm10.combinedJunctions.bb shortLabel TTPKO_union_union junctions longLabel TTPKO_union_union junctions type bigBed 12 visibility pack priority 1224 scoreMin 10 scoreMax 100 color 0,103,137 subGroups Group1=TTPKO Group2=union Group3=union view=JUNC ## Beginning of track view track NG138Zfp36L1KOLiver compositeTrack on shortLabel NG138 Zfp36L1KO Liver longLabel NG138 Zfp36L1KO Liver priority 2200 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ PEAK=Peaks \ JUNC=Junctions subGroup2 Group1 Group1 \ WT=WT \ Zfp36L1KO=Zfp36L1KO subGroup3 Group2 Group2 \ Liver=Liver dimensions dimX=Group1 dimY=Group2 sortOrder Group1=+ Group2=+ view=+ ## Views track coverage data track NG138Zfp36L1KOLiverView1 parent NG138Zfp36L1KOLiver shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track ES836_coverage parent NG138Zfp36L1KOLiverView1 on bigDataUrl ES836_1.sickle.merged.topHat2pe_mm10.bw shortLabel WT_Liver ES836 coverage longLabel WT_Liver ES836 coverage type bigWig color 147,37,37 priority 2202 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=WT Group2=Liver view=COV ## Coverage track track ES837_coverage parent NG138Zfp36L1KOLiverView1 on bigDataUrl ES837_1.sickle.merged.topHat2pe_mm10.bw shortLabel WT_Liver ES837 coverage longLabel WT_Liver ES837 coverage type bigWig color 147,37,37 priority 2204 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=WT Group2=Liver view=COV ## Coverage track track ES838_coverage parent NG138Zfp36L1KOLiverView1 on bigDataUrl ES838_1.sickle.merged.topHat2pe_mm10.bw shortLabel WT_Liver ES838 coverage longLabel WT_Liver ES838 coverage type bigWig color 147,37,37 priority 2206 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=WT Group2=Liver view=COV ## Coverage track track ES839_coverage parent NG138Zfp36L1KOLiverView1 on bigDataUrl ES839_1.sickle.merged.topHat2pe_mm10.bw shortLabel WT_Liver ES839 coverage longLabel WT_Liver ES839 coverage type bigWig color 147,37,37 priority 2208 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=WT Group2=Liver view=COV ## Coverage track track ES840_coverage parent NG138Zfp36L1KOLiverView1 on bigDataUrl ES840_1.sickle.merged.topHat2pe_mm10.bw shortLabel Zfp36L1KO_Liver ES840 coverage longLabel Zfp36L1KO_Liver ES840 coverage type bigWig color 170,122,0 priority 2210 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Zfp36L1KO Group2=Liver view=COV ## Coverage track track ES841_coverage parent NG138Zfp36L1KOLiverView1 on bigDataUrl ES841_1.sickle.merged.topHat2pe_mm10.bw shortLabel Zfp36L1KO_Liver ES841 coverage longLabel Zfp36L1KO_Liver ES841 coverage type bigWig color 170,122,0 priority 2212 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Zfp36L1KO Group2=Liver view=COV ## Coverage track track ES842_coverage parent NG138Zfp36L1KOLiverView1 on bigDataUrl ES842_1.sickle.merged.topHat2pe_mm10.bw shortLabel Zfp36L1KO_Liver ES842 coverage longLabel Zfp36L1KO_Liver ES842 coverage type bigWig color 170,122,0 priority 2214 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Zfp36L1KO Group2=Liver view=COV ## Coverage track track ES843_coverage parent NG138Zfp36L1KOLiverView1 on bigDataUrl ES843_1.sickle.merged.topHat2pe_mm10.bw shortLabel Zfp36L1KO_Liver ES843 coverage longLabel Zfp36L1KO_Liver ES843 coverage type bigWig color 170,122,0 priority 2216 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Zfp36L1KO Group2=Liver view=COV ## Coverage track track WT_Liver_coverage parent NG138Zfp36L1KOLiverView1 on bigDataUrl WT_Liver.union.TopHat2pe_mm10.bw shortLabel WT_Liver coverage longLabel WT_Liver coverage type bigWig color 147,37,37 priority 2218 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=WT Group2=Liver view=COV ## Coverage track track Zfp36L1KO_Liver_coverage parent NG138Zfp36L1KOLiverView1 on bigDataUrl Zfp36L1KO_Liver.union.TopHat2pe_mm10.bw shortLabel Zfp36L1KO_Liver coverage longLabel Zfp36L1KO_Liver coverage type bigWig color 170,122,0 priority 2220 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Zfp36L1KO Group2=Liver view=COV ## Views track for RNAseq, junctions data track NG138Zfp36L1KOLiverView2 parent NG138Zfp36L1KOLiver shortLabel RNAseq_junctions view JUNC visibility pack type bigBed 12 allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on scoreFilter 20 scoreFilterLimits 1:1000 viewUi on # combined junctions track track ES836_junctions parent NG138Zfp36L1KOLiverView2 on bigDataUrl ES836_1.sickle.merged.topHat2pe_mm10.sorted.bb shortLabel WT_Liver ES836 junctions longLabel WT_Liver ES836 junctions type bigBed 12 visibility pack priority 2222 scoreMin 10 scoreMax 100 color 147,37,37 subGroups Group1=WT Group2=Liver view=JUNC # combined junctions track track ES837_junctions parent NG138Zfp36L1KOLiverView2 on bigDataUrl ES837_1.sickle.merged.topHat2pe_mm10.sorted.bb shortLabel WT_Liver ES837 junctions longLabel WT_Liver ES837 junctions type bigBed 12 visibility pack priority 2224 scoreMin 10 scoreMax 100 color 147,37,37 subGroups Group1=WT Group2=Liver view=JUNC # combined junctions track track ES838_junctions parent NG138Zfp36L1KOLiverView2 on bigDataUrl ES838_1.sickle.merged.topHat2pe_mm10.sorted.bb shortLabel WT_Liver ES838 junctions longLabel WT_Liver ES838 junctions type bigBed 12 visibility pack priority 2226 scoreMin 10 scoreMax 100 color 147,37,37 subGroups Group1=WT Group2=Liver view=JUNC # combined junctions track track ES839_junctions parent NG138Zfp36L1KOLiverView2 on bigDataUrl ES839_1.sickle.merged.topHat2pe_mm10.sorted.bb shortLabel WT_Liver ES839 junctions longLabel WT_Liver ES839 junctions type bigBed 12 visibility pack priority 2228 scoreMin 10 scoreMax 100 color 147,37,37 subGroups Group1=WT Group2=Liver view=JUNC # combined junctions track track ES840_junctions parent NG138Zfp36L1KOLiverView2 on bigDataUrl ES840_1.sickle.merged.topHat2pe_mm10.sorted.bb shortLabel Zfp36L1KO_Liver ES840 junctions longLabel Zfp36L1KO_Liver ES840 junctions type bigBed 12 visibility pack priority 2230 scoreMin 10 scoreMax 100 color 170,122,0 subGroups Group1=Zfp36L1KO Group2=Liver view=JUNC # combined junctions track track ES841_junctions parent NG138Zfp36L1KOLiverView2 on bigDataUrl ES841_1.sickle.merged.topHat2pe_mm10.sorted.bb shortLabel Zfp36L1KO_Liver ES841 junctions longLabel Zfp36L1KO_Liver ES841 junctions type bigBed 12 visibility pack priority 2232 scoreMin 10 scoreMax 100 color 170,122,0 subGroups Group1=Zfp36L1KO Group2=Liver view=JUNC # combined junctions track track ES842_junctions parent NG138Zfp36L1KOLiverView2 on bigDataUrl ES842_1.sickle.merged.topHat2pe_mm10.sorted.bb shortLabel Zfp36L1KO_Liver ES842 junctions longLabel Zfp36L1KO_Liver ES842 junctions type bigBed 12 visibility pack priority 2234 scoreMin 10 scoreMax 100 color 170,122,0 subGroups Group1=Zfp36L1KO Group2=Liver view=JUNC # combined junctions track track ES843_junctions parent NG138Zfp36L1KOLiverView2 on bigDataUrl ES843_1.sickle.merged.topHat2pe_mm10.sorted.bb shortLabel Zfp36L1KO_Liver ES843 junctions longLabel Zfp36L1KO_Liver ES843 junctions type bigBed 12 visibility pack priority 2236 scoreMin 10 scoreMax 100 color 170,122,0 subGroups Group1=Zfp36L1KO Group2=Liver view=JUNC # combined junctions track track WT_Liver_junctions parent NG138Zfp36L1KOLiverView2 on bigDataUrl WT_Liver.TopHat2_mm10.combinedJunctions.bb shortLabel WT_Liver junctions longLabel WT_Liver junctions type bigBed 12 visibility pack priority 2238 scoreMin 10 scoreMax 100 color 147,37,37 subGroups Group1=WT Group2=Liver view=JUNC # combined junctions track track Zfp36L1KO_Liver_junctions parent NG138Zfp36L1KOLiverView2 on bigDataUrl Zfp36L1KO_Liver.TopHat2_mm10.combinedJunctions.bb shortLabel Zfp36L1KO_Liver junctions longLabel Zfp36L1KO_Liver junctions type bigBed 12 visibility pack priority 2240 scoreMin 10 scoreMax 100 color 170,122,0 subGroups Group1=Zfp36L1KO Group2=Liver view=JUNC