' ## TopHat2 junctions, merged across lanes per sample track junctionsNG108 compositeTrack on shortLabel DoubleKO NG108 TopHat2 junctions longLabel DoubleKO NG108 TopHat2 junctions type bigBed allButtonPair on centerLabelsDense on dragAndDrop on priority 400 visibility pack scoreFilterLimits 1:200 scoreFilter 5 # WT_NG108 combined junctions track WT_NG108_junc parent junctionsNG108 bigDataUrl WT_NG108.TopHat2_mm10.combinedJunctions.bed12.bb shortLabel WT_NG108 junctions longLabel WT_NG108 junctions type bigBed 12 color 110,110,140 visibility pack priority 402 #spectrum off #scoreMin 1 #scoreMax 200 itemRgb off exonArrows on # DoubleKO combined junctions track doubleKO_junc parent junctionsNG108 bigDataUrl DoubleKO_NG108.TopHat2_mm10.combinedJunctions.bed12.bb shortLabel DoubleKO_NG108 junctions longLabel DoubleKO_NG108 junctions type bigBed 12 color 250,100,0 visibility pack priority 404 #spectrum off #scoreMin 1 #scoreMax 200 itemRgb off exonArrows on ## Colors # "31,83,5" Zfp36l2_HepKO # "106,115,96" WT_HepKO ## TopHat2 junctions, merged across lanes per sample track junctionsNG131 compositeTrack on shortLabel HepKO NG131 TopHat2 junctions longLabel HepKO NG131 TopHat2 junctions type bigBed allButtonPair on centerLabelsDense on dragAndDrop on priority 510 visibility pack scoreFilter 5 # WT_NG131 combined junctions track WT_NG131_junc parent junctionsNG131 bigDataUrl WT.TopHat2_mm10.combinedJunctions.bb shortLabel WT_NG131 junctions longLabel WT_NG131 junctions type bigBed 12 color 106,115,96 visibility pack priority 511 #spectrum off #scoreMin 5 #scoreMax 10 #scoreFilter 10 itemRgb off exonArrows on # HepKO combined junctions track Zfp36l2_HepKO_junc parent junctionsNG131 bigDataUrl Zfp36l2_HepKO.TopHat2_mm10.combinedJunctions.bb shortLabel Zfp36l2_HepKO NG131 junctions longLabel Zfp36l2_HepKO NG131 junctions type bigBed 12 color 31,83,5 visibility pack priority 512 #spectrum off #scoreMin 5 #scoreMax 10 #scoreFilter 10 itemRgb off exonArrows on ## TopHat2 junctions, merged across lanes per sample track junctionsNG66 compositeTrack on shortLabel TripleKO NG66 TopHat2 junctions longLabel TripleKO NG66 TopHat2 junctions type bigBed allButtonPair on centerLabelsDense on dragAndDrop on priority 410 visibility pack scoreFilterLimits 1:200 scoreFilter 5 # WT_NG66 combined junctions track WT_NG66_junc parent junctionsNG66 bigDataUrl WT_NG66.TopHat2_mm10.combinedJunctions.bed12.bb shortLabel WT_NG66 junctions longLabel WT_NG66 junctions type bigBed 12 color 110,110,140 visibility pack priority 412 #spectrum off #scoreMin 1 #scoreMax 200 #minGrayLevel 2 itemRgb off exonArrows on # TripleKO combined junctions track tripleKO_junc parent junctionsNG66 bigDataUrl TripleKO_NG66.TopHat2_mm10.combinedJunctions.bed12.bb shortLabel TripleKO_NG66 junctions longLabel TripleKO_NG66 junctions type bigBed 12 color 175,33,33 visibility pack priority 414 #spectrum off #scoreMin 1 #scoreMax 200 #minGrayLevel 2 itemRgb off exonArrows on ## RNA-seq data coverage track set track doubleKOset compositeTrack on shortLabel Patial RNA-seq DoubleKO coverage longLabel Patial RNA-seq DoubleKO coverage type bigWig allButtonPair on centerLabelsDense on dragAndDrop on priority 200 alwaysZero on autoScale on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## RNA-seq data coverage tracks ## WT replicate 1 track WTNG108_r1 parent doubleKOset on bigDataUrl ES594_1.sanger.sickle.topHat2pe_mm10.bw shortLabel RNA-seq WT_1_NG108 longLabel RNA-seq WT_1_NG108 type bigWig color 110,110,140 priority 234 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## WT replicate 2 track WTNG108_r2 parent doubleKOset on bigDataUrl ES595_1.sanger.sickle.topHat2pe_mm10.bw shortLabel RNA-seq WT_2_NG108 longLabel RNA-seq WT_2_NG108 type bigWig color 110,110,140 priority 235 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## WT replicate 3 track WTNG108_r3 parent doubleKOset on bigDataUrl ES596_1.sanger.sickle.topHat2pe_mm10.bw shortLabel RNA-seq WT_3_NG108 longLabel RNA-seq WT_3_NG108 type bigWig color 110,110,140 priority 236 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## WT replicate 4 track WTNG108_r4 parent doubleKOset on bigDataUrl ES597_1.sanger.sickle.topHat2pe_mm10.bw shortLabel RNA-seq WT_4_NG108 longLabel RNA-seq WT_4_NG108 type bigWig color 110,110,140 priority 237 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## doubleKO replicate 1 track doubleKO_r1 parent doubleKOset on bigDataUrl ES598_1.sanger.sickle.topHat2pe_mm10.bw shortLabel RNA-seq doubleKO_1_NG108 longLabel RNA-seq doubleKO_1_NG108 type bigWig color 250,100,0 priority 243 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## doubleKO replicate 2 track doubleKO_r2 parent doubleKOset on bigDataUrl ES600_1.sanger.sickle.topHat2pe_mm10.bw shortLabel RNA-seq doubleKO_2_NG108 longLabel RNA-seq doubleKO_2_NG108 type bigWig color 250,100,0 priority 244 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## doubleKO replicate 3 track doubleKO_r3 parent doubleKOset on bigDataUrl ES628_1.sanger.sickle.topHat2pe_mm10.bw shortLabel RNA-seq doubleKO_3_NG108 longLabel RNA-seq doubleKO_3_NG108 type bigWig color 250,100,0 priority 245 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## doubleKO replicate 4 track doubleKO_r14 parent doubleKOset on bigDataUrl ES629_1.sanger.sickle.topHat2pe_mm10.bw shortLabel RNA-seq doubleKO_4_NG108 longLabel RNA-seq doubleKO_4_NG108 type bigWig color 250,100,0 priority 246 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## Colors # "31,83,5" Zfp36l2_HepKO # "106,115,96" WT_HepKO ## RNA-seq data coverage track set track HepKOset compositeTrack on shortLabel Patial RNA-seq HepKO coverage longLabel Patial RNA-seq HepKO coverage type bigWig allButtonPair on centerLabelsDense on dragAndDrop on priority 520 alwaysZero on autoScale on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## RNA-seq data coverage tracks ## HepKO replicate 1 track HepKO_r1 parent HepKOset on bigDataUrl ES786_1.sickle.merged.topHat2pe_mm10.bw shortLabel Zfp36l2_HepKO_1_NG131 longLabel Zfp36l2_HepKO_1_NG131 type bigWig color 31,83,5 priority 521 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## HepKO replicate 2 track HepKO_r2 parent HepKOset on bigDataUrl ES787_1.sickle.merged.topHat2pe_mm10.bw shortLabel Zfp36l2_HepKO_2_NG131 longLabel Zfp36l2_HepKO_2_NG131 type bigWig color 31,83,5 priority 522 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## HepKO replicate 3 track HepKO_r3 parent HepKOset on bigDataUrl ES788_1.sickle.merged.topHat2pe_mm10.bw shortLabel Zfp36l2_HepKO_3_NG131 longLabel Zfp36l2_HepKO_3_NG131 type bigWig color 31,83,5 priority 523 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## HepKO replicate 4 track HepKO_r14 parent HepKOset on bigDataUrl ES789_1.sickle.merged.topHat2pe_mm10.bw shortLabel Zfp36l2_HepKO_4_NG131 longLabel Zfp36l2_HepKO_4_NG131 type bigWig color 31,83,5 priority 524 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## WT replicate 1 track WTNG131_r1 parent HepKOset on bigDataUrl ES782_1.sickle.merged.topHat2pe_mm10.bw shortLabel WT_HepKO_1_NG131 longLabel WT_HepKO_1_NG131 type bigWig color 106,115,96 priority 531 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## WT replicate 2 track WTNG131_r2 parent HepKOset on bigDataUrl ES783_1.sickle.merged.topHat2pe_mm10.bw shortLabel WT_HepKO_2_NG131 longLabel WT_HepKO_2_NG131 type bigWig color 106,115,96 priority 532 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## WT replicate 3 track WTNG131_r3 parent HepKOset on bigDataUrl ES784_1.sickle.merged.topHat2pe_mm10.bw shortLabel WT_HepKO_3_NG131 longLabel WT_HepKO_3_NG131 type bigWig color 106,115,96 priority 533 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## WT replicate 4 track WTNG131_r4 parent HepKOset on bigDataUrl ES785_1.sickle.merged.topHat2pe_mm10.bw shortLabel WT_HepKO_4_NG131 longLabel WT_HepKO_4_NG131 type bigWig color 106,115,96 priority 534 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## RNA-seq data coverage track set track tripleKOset compositeTrack on shortLabel Patial RNA-seq TripleKO coverage longLabel Patial RNA-seq TripleKO coverage type bigWig allButtonPair on centerLabelsDense on dragAndDrop on priority 300 alwaysZero on autoScale on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## RNA-seq data coverage tracks ## WT replicate 1 track WTNG66_r1 parent tripleKOset on bigDataUrl ES333_merged.topHat2pe.bw shortLabel RNA-seq WT_1_NG66 longLabel RNA-seq WT_1_NG66 type bigWig color 110,110,140 priority 334 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## WT replicate 2 track WTNG66_r2 parent tripleKOset on bigDataUrl ES334_merged.topHat2pe.bw shortLabel RNA-seq WT_2_NG66 longLabel RNA-seq WT_2_NG66 type bigWig color 110,110,140 priority 335 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## WT replicate 3 track WTNG66_r3 parent tripleKOset on bigDataUrl ES335_merged.topHat2pe.bw shortLabel RNA-seq WT_3_NG66 longLabel RNA-seq WT_3_NG66 type bigWig color 110,110,140 priority 336 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## WT replicate 4 track WTNG66_r4 parent tripleKOset on bigDataUrl ES336_merged.topHat2pe.bw shortLabel RNA-seq WT_4_NG66 longLabel RNA-seq WT_4_NG66 type bigWig color 110,110,140 priority 337 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## TripleKO replicate 1 track tripleKO_r1 parent tripleKOset on bigDataUrl ES337_merged.topHat2pe.bw shortLabel RNA-seq TripleKO_r1_NG66 longLabel RNA-seq TripleKO_r1_NG66 type bigWig color 175,33,33 priority 340 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## TripleKO replicate 2 track tripleKO_r2 parent tripleKOset on bigDataUrl ES338_merged.topHat2pe.bw shortLabel RNA-seq TripleKO_r2_NG66 longLabel RNA-seq TripleKO_r2_NG66 type bigWig color 175,33,33 priority 341 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## TripleKO replicate 3 track tripleKO_r3 parent tripleKOset on bigDataUrl ES339_merged.topHat2pe.bw shortLabel RNA-seq TripleKO_r3_NG66 longLabel RNA-seq TripleKO_r3_NG66 type bigWig color 175,33,33 priority 342 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## TripleKO replicate 4 track tripleKO_r4 parent tripleKOset on bigDataUrl ES340_merged.topHat2pe.bw shortLabel RNA-seq TripleKO_r4_NG66 longLabel RNA-seq TripleKO_r4_NG66 type bigWig color 175,33,33 priority 343 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full