## NG-108 RNAseq DoubleKO track patialRnaseqDKONG108Set compositeTrack on shortLabel Patial DoubleKO RNAseq longLabel Patial DoubleKO RNAseq project NG-108 priority 630 visibility full subGroup1 view Views \ COV=Coverage \ JUNC=Junction subGroup2 treatment Treatment \ DoubleKO=DoubleKO \ WT_NG108=WT_NG108 subGroup3 content Data_Content \ REP=Replicates \ UNION=Union subGroup4 replicate Replicate \ r1=r1 \ r2=r2 \ r3=r3 \ r4=r4 \ union=union dimensions dimX=treatment dimY=content sortOrder treatment=- replicate=+ content=+ view=+ type bed 3 configurable on ## Views track for NG-108 RNAseq, coverage data track patialRnaseqDKONG108View1 parent patialRnaseqDKONG108Set shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 viewUi on ## RNAseq data coverage tracks ## NG108_WT replicate 1 track WT_NG108_r1 parent patialRnaseqDKONG108View1 on bigDataUrl A_ES594_1.sanger.sickle.topHat2pe_mm10.bw shortLabel RNAseq WT_NG108_r1 longLabel RNAseq WT_NG108_r1 type bigWig color 191,134,96 priority 636 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG108 content=REP view=COV replicate=r1 ## NG108_WT replicate 2 track WT_NG108_r2 parent patialRnaseqDKONG108View1 on bigDataUrl A_ES595_1.sanger.sickle.topHat2pe_mm10.bw shortLabel RNAseq WT_NG108_r2 longLabel RNAseq WT_NG108_r2 type bigWig color 191,134,96 priority 637 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG108 content=REP view=COV replicate=r2 ## NG108_WT replicate 3 track WT_NG108_r3 parent patialRnaseqDKONG108View1 on bigDataUrl A_ES596_1.sanger.sickle.topHat2pe_mm10.bw shortLabel RNAseq WT_NG108_r3 longLabel RNAseq WT_NG108_r3 type bigWig color 191,134,96 priority 638 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG108 content=REP view=COV replicate=r3 ## NG108_WT replicate 4 track WT_NG108_r4 parent patialRnaseqDKONG108View1 on bigDataUrl A_ES597_1.sanger.sickle.topHat2pe_mm10.bw shortLabel RNAseq WT_NG108_r4 longLabel RNAseq WT_NG108_r4 type bigWig color 191,134,96 priority 639 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG108 content=REP view=COV replicate=r4 ## DoubleKO replicate 1 track DoubleKO_r1 parent patialRnaseqDKONG108View1 on bigDataUrl ES598_1.sanger.sickle.topHat2pe_mm10.bw shortLabel RNAseq DoubleKO_r1 longLabel RNAseq DoubleKO_r1 type bigWig color 250,100,0 priority 641 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=DoubleKO content=REP view=COV replicate=r1 ## DoubleKO replicate 2 track DoubleKO_r2 parent patialRnaseqDKONG108View1 on bigDataUrl ES600_1.sanger.sickle.topHat2pe_mm10.bw shortLabel RNAseq DoubleKO_r2 longLabel RNAseq DoubleKO_r2 type bigWig color 250,100,0 priority 642 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=DoubleKO content=REP view=COV replicate=r2 ## DoubleKO replicate 3 track DoubleKO_r3 parent patialRnaseqDKONG108View1 on bigDataUrl ES628_1.sanger.sickle.topHat2pe_mm10.bw shortLabel RNAseq DoubleKO_r3 longLabel RNAseq DoubleKO_r3 type bigWig color 250,100,0 priority 643 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=DoubleKO content=REP view=COV replicate=r3 ## DoubleKO replicate 4 track DoubleKO_r4 parent patialRnaseqDKONG108View1 on bigDataUrl ES629_1.sanger.sickle.topHat2pe_mm10.bw shortLabel RNAseq DoubleKO_r4 longLabel RNAseq DoubleKO_r4 type bigWig color 250,100,0 priority 644 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=DoubleKO content=REP view=COV replicate=r4 ## RNAseq data coverage track union ## DoubleKO union coverage track DoubleKO_union parent patialRnaseqDKONG108View1 on bigDataUrl DoubleKO_union.TopHat2pe_mm10.bw shortLabel RNAseq DoubleKO longLabel RNAseq DoubleKO type bigWig color 250,100,0 priority 640 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on autoScale on viewLimits 0:200 visibility full subGroups treatment=DoubleKO content=UNION view=COV replicate=union ## WT_NG108 union coverage track WT_NG108_union parent patialRnaseqDKONG108View1 on bigDataUrl NG108_WT_union.TopHat2pe_mm10.bw shortLabel RNAseq WT_NG108 longLabel RNAseq WT_NG108 type bigWig color 191,134,96 priority 635 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on autoScale on viewLimits 0:200 visibility full subGroups treatment=WT_NG108 content=UNION view=COV replicate=union ## Views track for NG-108 RNAseq, junctions data track patialRnaseqDKONG108View2 parent patialRnaseqDKONG108Set shortLabel RNAseq_junctions_NG-108 view JUNC visibility pack type bigBed 12 allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on scoreFilter 20 scoreFilterLimits 1:1000 viewUi on # DoubleKO junctions track DoubleKO_r1_junc parent patialRnaseqDKONG108View2 on bigDataUrl ES598_1.sanger.sickle.topHat2pe_mm10.bam.TopHat2_mm10.sortedNamed.bb shortLabel TopHat2 junctions DoubleKO_r1 longLabel TopHat2 junctions DoubleKO_r1 type bigBed 12 color 250,100,0 visibility hide priority 651 subGroups treatment=DoubleKO content=REP view=JUNC replicate=r1 # DoubleKO junctions track DoubleKO_r2_junc parent patialRnaseqDKONG108View2 on bigDataUrl ES600_1.sanger.sickle.topHat2pe_mm10.bam.TopHat2_mm10.sortedNamed.bb shortLabel TopHat2 junctions DoubleKO_r2 longLabel TopHat2 junctions DoubleKO_r2 type bigBed 12 color 250,100,0 visibility hide priority 652 subGroups treatment=DoubleKO content=REP view=JUNC replicate=r2 # DoubleKO junctions track DoubleKO_r3_junc parent patialRnaseqDKONG108View2 on bigDataUrl ES628_1.sanger.sickle.topHat2pe_mm10.bam.TopHat2_mm10.sortedNamed.bb shortLabel TopHat2 junctions DoubleKO_r3 longLabel TopHat2 junctions DoubleKO_r3 type bigBed 12 color 250,100,0 visibility hide priority 653 subGroups treatment=DoubleKO content=REP view=JUNC replicate=r3 # DoubleKO junctions track DoubleKO_r4_junc parent patialRnaseqDKONG108View2 on bigDataUrl ES629_1.sanger.sickle.topHat2pe_mm10.bam.TopHat2_mm10.sortedNamed.bb shortLabel TopHat2 junctions DoubleKO_r4 longLabel TopHat2 junctions DoubleKO_r4 type bigBed 12 color 250,100,0 visibility hide priority 654 subGroups treatment=DoubleKO content=REP view=JUNC replicate=r4 # NG108_WT junctions track WT_NG108_r1_junc parent patialRnaseqDKONG108View2 on bigDataUrl ES594_1.sanger.sickle.topHat2pe_mm10.bam.TopHat2_mm10.sortedNamed.bb shortLabel TopHat2 junctions WT_NG108_r1 longLabel TopHat2 junctions WT_NG108_r1 type bigBed 12 color 191,134,96 visibility hide priority 656 subGroups treatment=WT_NG108 content=REP view=JUNC replicate=r1 # NG108_WT junctions track WT_NG108_r2_junc parent patialRnaseqDKONG108View2 on bigDataUrl ES595_1.sanger.sickle.topHat2pe_mm10.bam.TopHat2_mm10.sortedNamed.bb shortLabel TopHat2 junctions WT_NG108_r2 longLabel TopHat2 junctions WT_NG108_r2 type bigBed 12 color 191,134,96 visibility hide priority 657 subGroups treatment=WT_NG108 content=REP view=JUNC replicate=r2 # NG108_WT junctions track WT_NG108_r3_junc parent patialRnaseqDKONG108View2 on bigDataUrl ES596_1.sanger.sickle.topHat2pe_mm10.bam.TopHat2_mm10.sortedNamed.bb shortLabel TopHat2 junctions WT_NG108_r3 longLabel TopHat2 junctions WT_NG108_r3 type bigBed 12 color 191,134,96 visibility hide priority 658 subGroups treatment=WT_NG108 content=REP view=JUNC replicate=r3 # NG108_WT junctions track WT_NG108_r4_junc parent patialRnaseqDKONG108View2 on bigDataUrl ES597_1.sanger.sickle.topHat2pe_mm10.bam.TopHat2_mm10.sortedNamed.bb shortLabel TopHat2 junctions WT_NG108_r4 longLabel TopHat2 junctions WT_NG108_r4 type bigBed 12 color 191,134,96 visibility hide priority 659 subGroups treatment=WT_NG108 content=REP view=JUNC replicate=r4 # DoubleKO combined junctions track DoubleKO_junc parent patialRnaseqDKONG108View2 on bigDataUrl DoubleKO_NG108.TopHat2_mm10.combinedJunctions.bb shortLabel TopHat2 junctions DoubleKO longLabel TopHat2 junctions DoubleKO type bigBed 12 visibility pack priority 650 #spectrum on scoreMin 10 scoreMax 100 color 250,100,0 subGroups treatment=DoubleKO content=UNION view=JUNC replicate=union # WT_NG108 combined junctions track WT_NG108_junc parent patialRnaseqDKONG108View2 on bigDataUrl WT_NG108.TopHat2_mm10.combinedJunctions.bb shortLabel TopHat2 junctions WT_NG108 longLabel TopHat2 junctions WT_NG108 type bigBed 12 visibility pack priority 650 #spectrum on scoreMin 10 scoreMax 100 color 191,134,96 subGroups treatment=WT_NG108 content=UNION view=JUNC replicate=union