## Beginning of track view track patialNG157 compositeTrack on shortLabel Patial TTPKO RNAseq NG157 longLabel Patial TTPKO RNAseq NG157 priority 1200 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ PEAK=Peaks \ JUNC=Junctions subGroup2 Group1 Group1 \ WT_NG157=WT_NG157 \ TTPKO=TTPKO subGroup3 Group2 Group2 \ replicates=replicates \ union=union subGroup4 Group3 Group3 \ r1=r1 \ r2=r2 \ r3=r3 \ r4=r4 \ union=union dimensions dimX=Group1 dimY=Group2 sortOrder Group1=+ Group2=+ Group3=+ view=+ ## Views track coverage data track patialNG157View1 parent patialNG157 shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track ES1240_coverage parent patialNG157View1 on bigDataUrl ES1240_1.sickle.merged.topHat2pe_mm10.bw shortLabel WT_NG157_replicates_r1 coverage longLabel WT_NG157_replicates_r1 coverage type bigWig color 149,177,186 priority 1202 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=WT_NG157 Group2=replicates Group3=r1 view=COV ## Coverage track track ES1241_coverage parent patialNG157View1 on bigDataUrl ES1241_1.sickle.merged.topHat2pe_mm10.bw shortLabel WT_NG157_replicates_r2 coverage longLabel WT_NG157_replicates_r2 coverage type bigWig color 149,177,186 priority 1204 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=WT_NG157 Group2=replicates Group3=r2 view=COV ## Coverage track track ES1242_coverage parent patialNG157View1 on bigDataUrl ES1242_1.sickle.merged.topHat2pe_mm10.bw shortLabel WT_NG157_replicates_r3 coverage longLabel WT_NG157_replicates_r3 coverage type bigWig color 149,177,186 priority 1206 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=WT_NG157 Group2=replicates Group3=r3 view=COV ## Coverage track track ES1243_coverage parent patialNG157View1 on bigDataUrl ES1243_1.sickle.merged.topHat2pe_mm10.bw shortLabel WT_NG157_replicates_r4 coverage longLabel WT_NG157_replicates_r4 coverage type bigWig color 149,177,186 priority 1208 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=WT_NG157 Group2=replicates Group3=r4 view=COV ## Coverage track track ES1244_coverage parent patialNG157View1 on bigDataUrl ES1244_1.sickle.merged.topHat2pe_mm10.bw shortLabel TTPKO_replicates_r1 coverage longLabel TTPKO_replicates_r1 coverage type bigWig color 0,103,137 priority 1210 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=TTPKO Group2=replicates Group3=r1 view=COV ## Coverage track track ES1245_coverage parent patialNG157View1 on bigDataUrl ES1245_1.sickle.merged.topHat2pe_mm10.bw shortLabel TTPKO_replicates_r2 coverage longLabel TTPKO_replicates_r2 coverage type bigWig color 0,103,137 priority 1212 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=TTPKO Group2=replicates Group3=r2 view=COV ## Coverage track track ES1246_coverage parent patialNG157View1 on bigDataUrl ES1246_1.sickle.merged.topHat2pe_mm10.bw shortLabel TTPKO_replicates_r3 coverage longLabel TTPKO_replicates_r3 coverage type bigWig color 0,103,137 priority 1214 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=TTPKO Group2=replicates Group3=r3 view=COV ## Coverage track track ES1247_coverage parent patialNG157View1 on bigDataUrl ES1247_1.sickle.merged.topHat2pe_mm10.bw shortLabel TTPKO_replicates_r4 coverage longLabel TTPKO_replicates_r4 coverage type bigWig color 0,103,137 priority 1216 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=TTPKO Group2=replicates Group3=r4 view=COV ## Coverage track track WT_coverage parent patialNG157View1 on bigDataUrl WT_NG157_union.TopHat2pe_mm10.bw shortLabel RNAseq WT_NG157 longLabel RNAseq WT_NG157 type bigWig color 149,177,186 priority 1218 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=WT_NG157 Group2=union Group3=union view=COV ## Coverage track track TTPKO_coverage parent patialNG157View1 on bigDataUrl TTPKO_union.TopHat2pe_mm10.bw shortLabel RNAseq TTPKO longLabel RNAseq TTPKO type bigWig color 0,103,137 priority 1220 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=TTPKO Group2=union Group3=union view=COV ## Views track for RNAseq, junctions data track patialNG157View2 parent patialNG157 shortLabel RNAseq_junctions view JUNC visibility pack type bigBed 12 allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on scoreFilter 20 scoreFilterLimits 1:1000 viewUi on # combined junctions track track WT_junctions parent patialNG157View2 on bigDataUrl WT_NG157.TopHat2_mm10.combinedJunctions.bb shortLabel WT_NG157_union_union junctions longLabel WT_NG157_union_union junctions type bigBed 12 visibility pack priority 1222 scoreMin 10 scoreMax 100 color 149,177,186 subGroups Group1=WT_NG157 Group2=union Group3=union view=JUNC # combined junctions track track TTPKO_junctions parent patialNG157View2 on bigDataUrl TTPKO_NG157.TopHat2_mm10.combinedJunctions.bb shortLabel TTPKO_union_union junctions longLabel TTPKO_union_union junctions type bigBed 12 visibility pack priority 1224 scoreMin 10 scoreMax 100 color 0,103,137 subGroups Group1=TTPKO Group2=union Group3=union view=JUNC