## NG-101 RNAseq TTPdelARE track patialRnaseqARENG101Set compositeTrack on shortLabel Patial TTPdelARE RNAseq longLabel Patial TTPdelARE RNAseq project NG-101 priority 930 visibility full subGroup1 view Views \ COV=Coverage \ JUNC=Junction subGroup2 treatment Treatment \ TTPdelARE=TTPdelARE \ WT_NG101=WT_NG101 subGroup3 content Data_Content \ REP=Replicates \ UNION=Union subGroup4 replicate Replicate \ r1=r1 \ r2=r2 \ r3=r3 \ r4=r4 \ union=union dimensions dimX=treatment dimY=content sortOrder treatment=- replicate=+ content=+ view=+ type bed 3 configurable on ## Views track for NG-101 RNAseq, coverage data track patialRnaseqARENG101View1 parent patialRnaseqARENG101Set shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 viewUi on ## RNAseq data coverage tracks ## TTPdelARE replicate 1 track TTPdelARE_r1 parent patialRnaseqARENG101View1 on bigDataUrl ES536_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq TTPdelARE_r1 longLabel RNAseq TTPdelARE_r1 type bigWig color 90,50,140 priority 931 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=TTPdelARE content=REP view=COV replicate=r1 ## TTPdelARE replicate 2 track TTPdelARE_r2 parent patialRnaseqARENG101View1 on bigDataUrl ES537_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq TTPdelARE_r2 longLabel RNAseq TTPdelARE_r2 type bigWig color 90,50,140 priority 932 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=TTPdelARE content=REP view=COV replicate=r2 ## TTPdelARE replicate 3 track TTPdelARE_r3 parent patialRnaseqARENG101View1 on bigDataUrl ES538_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq TTPdelARE_r3 longLabel RNAseq TTPdelARE_r3 type bigWig color 90,50,140 priority 933 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=TTPdelARE content=REP view=COV replicate=r3 ## TTPdelARE replicate 4 track TTPdelARE_r4 parent patialRnaseqARENG101View1 on bigDataUrl ES539_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq TTPdelARE_r4 longLabel RNAseq TTPdelARE_r4 type bigWig color 90,50,140 priority 934 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=TTPdelARE content=REP view=COV replicate=r4 ## NG101_WT replicate 1 track WT_NG101_r1 parent patialRnaseqARENG101View1 on bigDataUrl ES532_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq WT_NG101_r1 longLabel RNAseq WT_NG101_r1 type bigWig color 132,115,153 priority 936 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG101 content=REP view=COV replicate=r1 ## NG101_WT replicate 2 track WT_NG101_r2 parent patialRnaseqARENG101View1 on bigDataUrl ES533_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq WT_NG101_r2 longLabel RNAseq WT_NG101_r2 type bigWig color 132,115,153 priority 937 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG101 content=REP view=COV replicate=r2 ## NG101_WT replicate 3 track WT_NG101_r3 parent patialRnaseqARENG101View1 on bigDataUrl ES534_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq WT_NG101_r3 longLabel RNAseq WT_NG101_r3 type bigWig color 132,115,153 priority 938 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG101 content=REP view=COV replicate=r3 ## NG101_WT replicate 4 track WT_NG101_r4 parent patialRnaseqARENG101View1 on bigDataUrl ES535_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq WT_NG101_r4 longLabel RNAseq WT_NG101_r4 type bigWig color 132,115,153 priority 939 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG101 content=REP view=COV replicate=r4 ## RNAseq data coverage track union ## TTPdelARE union coverage track TTPdelARE_union parent patialRnaseqARENG101View1 on bigDataUrl TTPdelARE_union.TopHat2pe_mm10.bw shortLabel RNAseq TTPdelARE longLabel RNAseq TTPdelARE type bigWig color 90,50,140 priority 930 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on autoScale on viewLimits 0:200 visibility full subGroups treatment=TTPdelARE content=UNION view=COV replicate=union ## WT_NG101 union coverage track WT_NG101_union parent patialRnaseqARENG101View1 on bigDataUrl NG101_WT_union.TopHat2pe_mm10.bw shortLabel RNAseq WT_NG101 longLabel RNAseq WT_NG101 type bigWig color 132,115,153 priority 935 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on autoScale on viewLimits 0:200 visibility full subGroups treatment=WT_NG101 content=UNION view=COV replicate=union ## Views track for NG-101 RNAseq, junctions data track patialRnaseqARENG101View2 parent patialRnaseqARENG101Set shortLabel RNAseq_junctions_NG-101 view JUNC visibility pack type bigBed 12 allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on scoreFilter 20 scoreFilterLimits 1:1000 viewUi on # TTPdelARE junctions track TTPdelARE_r1_junc parent patialRnaseqARENG101View2 on bigDataUrl ES536_1.sickle.merged.topHat2pe_mm10.sortedNamed.bb shortLabel TopHat2 junctions TTPdelARE_r1 longLabel TopHat2 junctions TTPdelARE_r1 type bigBed 12 color 90,50,140 visibility hide priority 951 subGroups treatment=TTPdelARE content=REP view=JUNC replicate=r1 # TTPdelARE junctions track TTPdelARE_r2_junc parent patialRnaseqARENG101View2 on bigDataUrl ES537_1.sickle.merged.topHat2pe_mm10.sortedNamed.bb shortLabel TopHat2 junctions TTPdelARE_r2 longLabel TopHat2 junctions TTPdelARE_r2 type bigBed 12 color 90,50,140 visibility hide priority 952 subGroups treatment=TTPdelARE content=REP view=JUNC replicate=r2 # TTPdelARE junctions track TTPdelARE_r3_junc parent patialRnaseqARENG101View2 on bigDataUrl ES538_1.sickle.merged.topHat2pe_mm10.sortedNamed.bb shortLabel TopHat2 junctions TTPdelARE_r3 longLabel TopHat2 junctions TTPdelARE_r3 type bigBed 12 color 90,50,140 visibility hide priority 953 subGroups treatment=TTPdelARE content=REP view=JUNC replicate=r3 # TTPdelARE junctions track TTPdelARE_r4_junc parent patialRnaseqARENG101View2 on bigDataUrl ES539_1.sickle.merged.topHat2pe_mm10.sortedNamed.bb shortLabel TopHat2 junctions TTPdelARE_r4 longLabel TopHat2 junctions TTPdelARE_r4 type bigBed 12 color 90,50,140 visibility hide priority 954 subGroups treatment=TTPdelARE content=REP view=JUNC replicate=r4 # NG101_WT junctions track WT_NG101_r1_junc parent patialRnaseqARENG101View2 on bigDataUrl ES532_1.sickle.merged.topHat2pe_mm10.sortedNamed.bb shortLabel TopHat2 junctions WT_NG101_r1 longLabel TopHat2 junctions WT_NG101_r1 type bigBed 12 color 132,115,153 visibility hide priority 956 subGroups treatment=WT_NG101 content=REP view=JUNC replicate=r1 # NG101_WT junctions track WT_NG101_r2_junc parent patialRnaseqARENG101View2 on bigDataUrl ES533_1.sickle.merged.topHat2pe_mm10.sortedNamed.bb shortLabel TopHat2 junctions WT_NG101_r2 longLabel TopHat2 junctions WT_NG101_r2 type bigBed 12 color 132,115,153 visibility hide priority 957 subGroups treatment=WT_NG101 content=REP view=JUNC replicate=r2 # NG101_WT junctions track WT_NG101_r3_junc parent patialRnaseqARENG101View2 on bigDataUrl ES534_1.sickle.merged.topHat2pe_mm10.sortedNamed.bb shortLabel TopHat2 junctions WT_NG101_r3 longLabel TopHat2 junctions WT_NG101_r3 type bigBed 12 color 132,115,153 visibility hide priority 958 subGroups treatment=WT_NG101 content=REP view=JUNC replicate=r3 # NG101_WT junctions track WT_NG101_r4_junc parent patialRnaseqARENG101View2 on bigDataUrl ES535_1.sickle.merged.topHat2pe_mm10.sortedNamed.bb shortLabel TopHat2 junctions WT_NG101_r4 longLabel TopHat2 junctions WT_NG101_r4 type bigBed 12 color 132,115,153 visibility hide priority 959 subGroups treatment=WT_NG101 content=REP view=JUNC replicate=r4 # TTPdelARE combined junctions track TTPdelARE_junc parent patialRnaseqARENG101View2 on bigDataUrl TC_TTPdelARE.TopHat2_mm10.combinedJunctions.bb shortLabel TopHat2 junctions TTPdelARE longLabel TopHat2 junctions TTPdelARE type bigBed 12 visibility pack priority 960 #spectrum on scoreMin 10 scoreMax 100 color 90,50,140 subGroups treatment=TTPdelARE content=UNION view=JUNC replicate=union # WT_NG101 combined junctions track WT_NG101_junc parent patialRnaseqARENG101View2 on bigDataUrl TC_WT.TopHat2_mm10.combinedJunctions.bb shortLabel TopHat2 junctions WT_NG101 longLabel TopHat2 junctions WT_NG101 type bigBed 12 visibility pack priority 961 #spectrum on scoreMin 10 scoreMax 100 color 132,115,153 subGroups treatment=WT_NG101 content=UNION view=JUNC replicate=union