## NG-66 RNAseq TripleKO track patialRnaseqTKONG66Set compositeTrack on shortLabel Patial TripleKO RNAseq longLabel Patial TripleKO RNAseq project NG-66 priority 730 visibility full subGroup1 view Views \ COV=Coverage \ JUNC=Junction subGroup2 treatment Treatment \ TripleKO=TripleKO \ WT_NG66=WT_NG66 subGroup3 content Data_Content \ REP=Replicates \ UNION=Union subGroup4 replicate Replicate \ r1=r1 \ r2=r2 \ r3=r3 \ r4=r4 \ union=union dimensions dimX=treatment dimY=content sortOrder treatment=- replicate=+ content=+ view=+ type bed 3 configurable on ## Views track for NG-66 RNAseq, coverage data track patialRnaseqTKONG66View1 parent patialRnaseqTKONG66Set shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 viewUi on ## RNAseq data coverage tracks ## TripleKO replicate 1 track TripleKO_r1 parent patialRnaseqTKONG66View1 on bigDataUrl ES337_merged.topHat2pe.bw shortLabel RNAseq TripleKO_r1 longLabel RNAseq TripleKO_r1 type bigWig color 175,33,33 priority 741 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=TripleKO content=REP view=COV replicate=r1 ## TripleKO replicate 2 track TripleKO_r2 parent patialRnaseqTKONG66View1 on bigDataUrl ES338_merged.topHat2pe.bw shortLabel RNAseq TripleKO_r2 longLabel RNAseq TripleKO_r2 type bigWig color 175,33,33 priority 742 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=TripleKO content=REP view=COV replicate=r2 ## TripleKO replicate 3 track TripleKO_r3 parent patialRnaseqTKONG66View1 on bigDataUrl ES339_merged.topHat2pe.bw shortLabel RNAseq TripleKO_r3 longLabel RNAseq TripleKO_r3 type bigWig color 175,33,33 priority 743 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=TripleKO content=REP view=COV replicate=r3 ## TripleKO replicate 4 track TripleKO_r4 parent patialRnaseqTKONG66View1 on bigDataUrl ES340_merged.topHat2pe.bw shortLabel RNAseq TripleKO_r4 longLabel RNAseq TripleKO_r4 type bigWig color 175,33,33 priority 744 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=TripleKO content=REP view=COV replicate=r4 ## NG66_WT replicate 1 track WT_NG66_r1 parent patialRnaseqTKONG66View1 on bigDataUrl ES333_merged.topHat2pe.bw shortLabel RNAseq WT_NG66_r1 longLabel RNAseq WT_NG66_r1 type bigWig color 166,108,108 priority 736 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG66 content=REP view=COV replicate=r1 ## NG66_WT replicate 2 track WT_NG66_r2 parent patialRnaseqTKONG66View1 on bigDataUrl ES334_merged.topHat2pe.bw shortLabel RNAseq WT_NG66_r2 longLabel RNAseq WT_NG66_r2 type bigWig color 166,108,108 priority 737 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG66 content=REP view=COV replicate=r2 ## NG66_WT replicate 3 track WT_NG66_r3 parent patialRnaseqTKONG66View1 on bigDataUrl ES335_merged.topHat2pe.bw shortLabel RNAseq WT_NG66_r3 longLabel RNAseq WT_NG66_r3 type bigWig color 166,108,108 priority 738 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG66 content=REP view=COV replicate=r3 ## NG66_WT replicate 4 track WT_NG66_r4 parent patialRnaseqTKONG66View1 on bigDataUrl ES336_merged.topHat2pe.bw shortLabel RNAseq WT_NG66_r4 longLabel RNAseq WT_NG66_r4 type bigWig color 166,108,108 priority 739 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG66 content=REP view=COV replicate=r4 ## RNAseq data coverage track union ## TripleKO union coverage track TripleKO_union parent patialRnaseqTKONG66View1 on bigDataUrl TripleKO_union.TopHat2pe_mm10.bw shortLabel RNAseq TripleKO longLabel RNAseq TripleKO type bigWig color 175,33,33 priority 740 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on autoScale on viewLimits 0:200 visibility full subGroups treatment=TripleKO content=UNION view=COV replicate=union ## WT_NG66 union coverage track WT_NG66_union parent patialRnaseqTKONG66View1 on bigDataUrl NG66_WT_union.TopHat2pe_mm10.bw shortLabel RNAseq WT_NG66 longLabel RNAseq WT_NG66 type bigWig color 166,108,108 priority 735 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on autoScale on viewLimits 0:200 visibility full subGroups treatment=WT_NG66 content=UNION view=COV replicate=union ## Views track for NG-66 RNAseq, junctions data track patialRnaseqTKONG66View2 parent patialRnaseqTKONG66Set shortLabel RNAseq_junctions_NG-66 view JUNC visibility pack type bigBed 12 allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on scoreFilter 20 scoreFilterLimits 1:1000 viewUi on # TripleKO junctions track TripleKO_r1_junc parent patialRnaseqTKONG66View2 on bigDataUrl ES337-4_1.sanger.sickle.topHat2pe_mm10.bam.TopHat2_mm10.sortedNamed.bb shortLabel TopHat2 junctions TripleKO_r1 longLabel TopHat2 junctions TripleKO_r1 type bigBed 12 color 175,33,33 visibility hide priority 1751 subGroups treatment=TripleKO content=REP view=JUNC replicate=r1 # TripleKO junctions track TripleKO_r2_junc parent patialRnaseqTKONG66View2 on bigDataUrl ES338-4_1.sanger.sickle.topHat2pe_mm10.bam.TopHat2_mm10.sortedNamed.bb shortLabel TopHat2 junctions TripleKO_r2 longLabel TopHat2 junctions TripleKO_r2 type bigBed 12 color 175,33,33 visibility hide priority 1752 subGroups treatment=TripleKO content=REP view=JUNC replicate=r2 # TripleKO junctions track TripleKO_r3_junc parent patialRnaseqTKONG66View2 on bigDataUrl ES339-4_1.sanger.sickle.topHat2pe_mm10.bam.TopHat2_mm10.sortedNamed.bb shortLabel TopHat2 junctions TripleKO_r3 longLabel TopHat2 junctions TripleKO_r3 type bigBed 12 color 175,33,33 visibility hide priority 1753 subGroups treatment=TripleKO content=REP view=JUNC replicate=r3 # TripleKO junctions track TripleKO_r4_junc parent patialRnaseqTKONG66View2 on bigDataUrl ES340-4_1.sanger.sickle.topHat2pe_mm10.bam.TopHat2_mm10.sortedNamed.bb shortLabel TopHat2 junctions TripleKO_r4 longLabel TopHat2 junctions TripleKO_r4 type bigBed 12 color 175,33,33 visibility hide priority 1754 subGroups treatment=TripleKO content=REP view=JUNC replicate=r4 # NG66_WT junctions track WT_NG66_r1_junc parent patialRnaseqTKONG66View2 on bigDataUrl ES333_1.sickle.merged.topHat2pe_mm10.combinedJunctions.sorted.bb shortLabel TopHat2 junctions WT_NG66_r1 longLabel TopHat2 junctions WT_NG66_r1 type bigBed 12 color 166,108,108 visibility hide priority 1756 subGroups treatment=WT_NG66 content=REP view=JUNC replicate=r1 # NG66_WT junctions track WT_NG66_r2_junc parent patialRnaseqTKONG66View2 on bigDataUrl ES334_1.sickle.merged.topHat2pe_mm10.combinedJunctions.sorted.bb shortLabel TopHat2 junctions WT_NG66_r2 longLabel TopHat2 junctions WT_NG66_r2 type bigBed 12 color 166,108,108 visibility hide priority 1757 subGroups treatment=WT_NG66 content=REP view=JUNC replicate=r2 # NG66_WT junctions track WT_NG66_r3_junc parent patialRnaseqTKONG66View2 on bigDataUrl ES335_1.sickle.merged.topHat2pe_mm10.combinedJunctions.sorted.bb shortLabel TopHat2 junctions WT_NG66_r3 longLabel TopHat2 junctions WT_NG66_r3 type bigBed 12 color 166,108,108 visibility hide priority 1758 subGroups treatment=WT_NG66 content=REP view=JUNC replicate=r3 # NG66_WT junctions track WT_NG66_r4_junc parent patialRnaseqTKONG66View2 on bigDataUrl ES336_1.sickle.merged.topHat2pe_mm10.combinedJunctions.sorted.bb shortLabel TopHat2 junctions WT_NG66_r4 longLabel TopHat2 junctions WT_NG66_r4 type bigBed 12 color 166,108,108 visibility hide priority 1759 subGroups treatment=WT_NG66 content=REP view=JUNC replicate=r4 # TripleKO combined junctions track TripleKO_junc parent patialRnaseqTKONG66View2 on bigDataUrl TripleKO_NG66.TopHat2_mm10.combinedJunctions.bb shortLabel TopHat2 junctions TripleKO longLabel TopHat2 junctions TripleKO type bigBed 12 visibility pack priority 1750 #spectrum on scoreMin 10 scoreMax 100 color 175,33,33 subGroups treatment=TripleKO content=UNION view=JUNC replicate=union # WT_NG66 combined junctions track WT_NG66_junc parent patialRnaseqTKONG66View2 on bigDataUrl WT_NG66.TopHat2_mm10.combinedJunctions.bb shortLabel TopHat2 junctions WT_NG66 longLabel TopHat2 junctions WT_NG66 type bigBed 12 visibility pack priority 1750 #spectrum on scoreMin 10 scoreMax 100 color 166,108,108 subGroups treatment=WT_NG66 content=UNION view=JUNC replicate=union