## NG-131 RNAseq Zfp36l2_HepKO track patialRnaseqHepKONG131Set compositeTrack on shortLabel Patial Zfp36l2_HepKO RNAseq longLabel Patial Zfp36l2_HepKO RNAseq project NG-131 priority 1030 visibility full subGroup1 view Views \ COV=Coverage \ JUNC=Junction subGroup2 treatment Treatment \ Zfp36l2_HepKO=Zfp36l2_HepKO \ WT_NG131=WT_NG131 subGroup3 content Data_Content \ REP=Replicates \ UNION=Union subGroup4 replicate Replicate \ r1=r1 \ r2=r2 \ r3=r3 \ r4=r4 \ union=union dimensions dimX=treatment dimY=content sortOrder treatment=+ replicate=+ content=+ view=+ type bed 3 configurable on ## Views track for NG-131 RNAseq, coverage data track patialRnaseqHepKONG131View1 parent patialRnaseqHepKONG131Set shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 viewUi on ## RNAseq data coverage tracks ## Zfp36l2_HepKO replicate 1 track Zfp36l2_HepKO_r1 parent patialRnaseqHepKONG131View1 on bigDataUrl ES786_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq Zfp36l2_HepKO_r1 longLabel RNAseq Zfp36l2_HepKO_r1 type bigWig color 31,83,5 priority 1031 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=Zfp36l2_HepKO content=REP view=COV replicate=r1 ## Zfp36l2_HepKO replicate 2 track Zfp36l2_HepKO_r2 parent patialRnaseqHepKONG131View1 on bigDataUrl ES787_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq Zfp36l2_HepKO_r2 longLabel RNAseq Zfp36l2_HepKO_r2 type bigWig color 31,83,5 priority 1032 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=Zfp36l2_HepKO content=REP view=COV replicate=r2 ## Zfp36l2_HepKO replicate 3 track Zfp36l2_HepKO_r3 parent patialRnaseqHepKONG131View1 on bigDataUrl ES788_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq Zfp36l2_HepKO_r3 longLabel RNAseq Zfp36l2_HepKO_r3 type bigWig color 31,83,5 priority 1033 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=Zfp36l2_HepKO content=REP view=COV replicate=r3 ## Zfp36l2_HepKO replicate 4 track Zfp36l2_HepKO_r4 parent patialRnaseqHepKONG131View1 on bigDataUrl ES789_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq Zfp36l2_HepKO_r4 longLabel RNAseq Zfp36l2_HepKO_r4 type bigWig color 31,83,5 priority 1034 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=Zfp36l2_HepKO content=REP view=COV replicate=r4 ## NG131_WT replicate 1 track WT_NG131_r1 parent patialRnaseqHepKONG131View1 on bigDataUrl ES782_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq WT_NG131_r1 longLabel RNAseq WT_NG131_r1 type bigWig color 115,128,108 priority 1036 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG131 content=REP view=COV replicate=r1 ## NG131_WT replicate 2 track WT_NG131_r2 parent patialRnaseqHepKONG131View1 on bigDataUrl ES783_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq WT_NG131_r2 longLabel RNAseq WT_NG131_r2 type bigWig color 115,128,108 priority 1037 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG131 content=REP view=COV replicate=r2 ## NG131_WT replicate 3 track WT_NG131_r3 parent patialRnaseqHepKONG131View1 on bigDataUrl ES784_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq WT_NG131_r3 longLabel RNAseq WT_NG131_r3 type bigWig color 115,128,108 priority 1038 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG131 content=REP view=COV replicate=r3 ## NG131_WT replicate 4 track WT_NG131_r4 parent patialRnaseqHepKONG131View1 on bigDataUrl ES785_1.sickle.merged.topHat2pe_mm10.bw shortLabel RNAseq WT_NG131_r4 longLabel RNAseq WT_NG131_r4 type bigWig color 115,128,108 priority 1039 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility hide subGroups treatment=WT_NG131 content=REP view=COV replicate=r4 ## RNAseq data coverage track union ## Zfp36l2_HepKO union coverage track Zfp36l2_HepKO_union parent patialRnaseqHepKONG131View1 on bigDataUrl Zfp36l2_HepKO_union.TopHat2pe_mm10.bw shortLabel RNAseq Zfp36l2_HepKO longLabel RNAseq Zfp36l2_HepKO type bigWig color 31,83,5 priority 1030 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on autoScale on viewLimits 0:200 visibility full subGroups treatment=Zfp36l2_HepKO content=UNION view=COV replicate=union ## WT_NG131 union coverage track WT_NG131_union parent patialRnaseqHepKONG131View1 on bigDataUrl NG131_WT_union.TopHat2pe_mm10.bw shortLabel RNAseq WT_NG131 longLabel RNAseq WT_NG131 type bigWig color 115,128,108 priority 1035 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on autoScale on viewLimits 0:200 visibility full subGroups treatment=WT_NG131 content=UNION view=COV replicate=union ## Views track for NG-131 RNAseq, junctions data track patialRnaseqHepKONG131View2 parent patialRnaseqHepKONG131Set shortLabel RNAseq_junctions_NG-131 view JUNC visibility pack type bigBed 12 allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on scoreFilter 20 scoreFilterLimits 1:1000 viewUi on # Zfp36l2_HepKO combined junctions track Zfp36l2_HepKO_junc parent patialRnaseqHepKONG131View2 on bigDataUrl Zfp36l2_HepKO.TopHat2_mm10.combinedJunctions.bb shortLabel TopHat2 junctions Zfp36l2_HepKO longLabel TopHat2 junctions Zfp36l2_HepKO type bigBed 12 visibility pack priority 1050 #spectrum on scoreMin 10 scoreMax 100 color 31,83,5 subGroups treatment=Zfp36l2_HepKO content=UNION view=JUNC replicate=union # WT_NG131 combined junctions track WT_NG131_junc parent patialRnaseqHepKONG131View2 on bigDataUrl WT_NG131.TopHat2_mm10.combinedJunctions.bb shortLabel TopHat2 junctions WT_NG131 longLabel TopHat2 junctions WT_NG131 type bigBed 12 visibility pack priority 1050 #spectrum on scoreMin 10 scoreMax 100 color 115,128,108 subGroups treatment=WT_NG131 content=UNION view=JUNC replicate=union