######################################### ## Composite track for all RNA-seq tracks: track raoComposite compositeTrack on shortLabel Rao Composite RNAseq longLabel Rao RNAseq H1hESC siBrg1 vs NT siRNA type bigWig viewLevel 0:1000 allButtonPair on centerLabelsDense on visibility full ######################################### ## RNA-seq tracks: track NTrep1_ES365 parent raoComposite on bigDataUrl ES365_hg18_accepted_hits.bw shortLabel H1+NT siRNA_1 longLabel Rao H1hESC +NT siRNA_1 (ES365) type bigWig color 30,160,120 priority 101 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 4 transformFunc NONE windowingFunction mean+whiskers gridDefault off viewLimits 0:1000 visibility full track NTrep2_ES366 parent raoComposite on bigDataUrl ES366_hg18_accepted_hits.bw shortLabel H1+NT siRNA_2 longLabel Rao H1hESC +NT siRNA_2 (ES366) type bigWig color 30,140,110 priority 102 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 4 transformFunc NONE windowingFunction mean+whiskers gridDefault off viewLimits 0:1000 visibility full track Brg1rep1_ES367 parent raoComposite on bigDataUrl ES367_hg18_accepted_hits.bw shortLabel H1+Brg1 siRNA_1 longLabel Rao H1hESC +siBrg1_1 (ES367) type bigWig color 227,105,61 priority 103 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 4 transformFunc NONE windowingFunction mean+whiskers gridDefault off viewLimits 0:1000 visibility full track Brg1rep2_ES368 parent raoComposite on bigDataUrl ES368_hg18_accepted_hits.bw shortLabel H1+Brg1 siRNA_2 longLabel Rao H1hESC +siBrg1_2 (ES368) type bigWig color 232,87,55 priority 104 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 4 transformFunc NONE windowingFunction mean+whiskers gridDefault off viewLimits 0:1000 visibility full ########################## ## Overlay multiple tracks: track raoMultiWig container multiWig aggregate transparentOverlay shortLabel Rao RNAseq Layered longLabel Rao RNAseq Layered H1hESC siBrg1 vs NT siRNA showSubtrackColorOnUi on type bigWig viewLimits 0:2400 maxHeightPixels 100:48:8 graphTypeDefault bar smoothingWindow 8 transformFunc NONE windowingFunction maximum visibility full gridDefault off track NTrep1multiWig table NTrep1_ES365 bigDataUrl ES365_hg18_accepted_hits.bw type bigWig parent raoMultiWig on color 100,190,165 priority 111 track NTrep2multiWig table NTrep2_ES366 bigDataUrl ES366_hg18_accepted_hits.bw type bigWig parent raoMultiWig on color 100,205,150 priority 112 track Brg1rep1multiWig table Brg1rep2_ES367 bigDataUrl ES367_hg18_accepted_hits.bw type bigWig parent raoMultiWig on color 250,140,100 priority 113 track Brg1rep2multiWig table Brg1rep2_ES366 bigDataUrl ES368_hg18_accepted_hits.bw type bigWig parent raoMultiWig on color 255,120,90 priority 114 ################## ## Composite Track # GSE29422hg18 # track GSE29422hg18 compositeTrack on shortLabel GSE29422 Smad234 ESC hg18 longLabel GSE29422 Smad234 ESC hg18 type bigBed allButtonPair on centerLabelsDense on dragAndDrop on priority 2000 visibility dense # # GSE29422hg18 ## Composite Track ################################### # bigBed peaks GSM727557_d0Smad2-3 track GSM727557_d0Smad2-3 parent GSE29422hg18 on bigDataUrl GSM727557_d0Smad2-3_hg18.bb shortLabel day0 Smad2-3 longLabel GSM727557 day0 Smad2-3 type bigBed color 186,71,103 visibility dense priority 201 ################################### # bigBed peaks GSM727558_d0Smad2-3_goat track GSM727558_d0Smad2-3_goat parent GSE29422hg18 on bigDataUrl GSM727558_d0Smad2-3_goat_hg18.bb shortLabel day0 Smad2-3_goat longLabel GSM727558 day0 Smad2-3_goat type bigBed color 186,71,103 visibility dense priority 202 ################################### # bigBed peaks GSM727583_d5Smad2-3 track GSM727583_d5Smad2-3 parent GSE29422hg18 on bigDataUrl GSM727583_d5Smad2-3_hg18.bb shortLabel day5 Smad2-3 longLabel GSM727583 day5 Smad2-3 type bigBed color 127,34,60 visibility dense priority 203 ################################### # bigBed peaks GSM727584_d5Smad2-3_goat track GSM727584_d5Smad2-3_goat parent GSE29422hg18 on bigDataUrl GSM727584_d5Smad2-3_goat_hg18.bb shortLabel day5 Smad2-3_goat longLabel GSM727584 day5 Smad2-3_goat type bigBed color 127,34,60 visibility dense priority 204 ################################### # bigBed peaks GSM727559_d0Smad3 track GSM727559_d0Smad3 parent GSE29422hg18 on bigDataUrl GSM727559_d0Smad3_hg18.bb shortLabel day0 Smad3 longLabel GSM727559 day0 Smad3 type bigBed color 234,169,21 visibility dense priority 205 ################################### # bigBed peaks GSM727585_d5Smad3 track GSM727585_d5Smad3 parent GSE29422hg18 on bigDataUrl GSM727585_d5Smad3_hg18.bb shortLabel day5 Smad3 longLabel GSM727585 day5 Smad3 type bigBed color 175,122,0 visibility dense priority 206 ################################### # bigBed peaks GSM727561_d0Smad4 track GSM727561_d0Smad4 parent GSE29422hg18 on bigDataUrl GSM727561_d0Smad4_hg18.bb shortLabel day0 Smad4 longLabel GSM727561 day0 Smad4 type bigBed color 121,160,15 visibility dense priority 207 ################################### # bigBed peaks GSM727586_d5Smad4 track GSM727586_d5Smad4 parent GSE29422hg18 on bigDataUrl GSM727586_d5Smad4_hg18.bb shortLabel day5 Smad4 longLabel GSM727586 day5 Smad4 type bigBed color 74,101,0 visibility dense priority 208 ################################### # bigBed peaks GSM727564_d0Foxh1 track GSM727564_d0Foxh1 parent GSE29422hg18 on bigDataUrl GSM727564_d0Foxh1_hg18.bb shortLabel day0 Foxh1 longLabel GSM727564 day0 Foxh1 type bigBed color 13,139,76 visibility dense priority 209 ################################### # bigBed peaks GSM727589_d5Foxh1 track GSM727589_d5Foxh1 parent GSE29422hg18 on bigDataUrl GSM727589_d5Foxh1_hg18.bb shortLabel day5 Foxh1 longLabel GSM727589 day5 Foxh1 type bigBed color 0,80,40 visibility dense priority 210 ################################### # bigBed peaks GSM727572_d0K4_regions track GSM727572_d0K4_regions parent GSE29422hg18 on bigDataUrl GSM727572_d0K4.regions_hg18.bb shortLabel day0 K4_regions longLabel GSM727572 day0 K4_regions type bigBed color 16,153,172 visibility dense priority 211 ################################### # bigBed peaks GSM727596_d5K4_regions track GSM727596_d5K4_regions parent GSE29422hg18 on bigDataUrl GSM727596_d5K4.regions_hg18.bb shortLabel day5 K4_regions longLabel GSM727596 day5 K4_regions type bigBed color 0,99,113 visibility dense priority 212 ################################### # bigBed peaks GSM727577_d0K27_regions track GSM727577_d0K27_regions parent GSE29422hg18 on bigDataUrl GSM727577_d0K27.regions_hg18.bb shortLabel day0 K27_regions longLabel GSM727577 day0 K27_regions type bigBed color 114,147,230 visibility dense priority 213 ################################### # bigBed peaks GSM727601_d5K27_regions track GSM727601_d5K27_regions parent GSE29422hg18 on bigDataUrl GSM727601_d5K27.regions_hg18.bb shortLabel day5 K27_regions longLabel GSM727601 day5 K27_regions type bigBed color 63,94,171 visibility dense priority 214 ################################### ################################### ## Brg1 ChIP-seq GEO data ## GSM602297_ESC_BRG1_aligned_minus_slop50_hg18.bw ## GSM602297_ESC_BRG1_aligned_minus_slop50_inverted_hg18.bw ## Overlay multiple tracks: track brg1GSM602297multiWig container multiWig aggregate transparentOverlay shortLabel Brg1 H9 ChIP-seq longLabel Brg1 H9 hESC ChIP-seq (GEO: GSM602297) showSubtrackColorOnUi on type bigWig viewLimits -40:40 maxHeightPixels 100:48:8 graphTypeDefault bar smoothingWindow 8 transformFunc NONE windowingFunction maximum visibility full gridDefault off track Brg1HESCplus bigDataUrl GSM602297_ESC_BRG1_aligned_minus_slop50_hg18.bw type bigWig parent brg1GSM602297multiWig color 30,70,220 priority 311 track Brg1HESCminus bigDataUrl GSM602297_ESC_BRG1_aligned_minus_slop50_inverted_hg18.bw type bigWig parent brg1GSM602297multiWig color 170,0,0 priority 312