######################################### ## Composite track for all RNA-seq tracks: track raoComposite compositeTrack on shortLabel Rao Composite RNAseq longLabel Composite of multiple RNA-seq tracks type bigWig viewLevel 0:1000 allButtonPair on centerLabelsDense on ######################################### ## RNA-seq tracks: track NTrep1_ES365 parent raoComposite on bigDataUrl ES365_hg18_accepted_hits.bw shortLabel H1+NT siRNA rep1 longLabel H1 ES cells + NT siRNA (ES365) type bigWig color 30,160,120 priority 101 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 4 transformFunc NONE windowingFunction mean+whiskers gridDefault off viewLimits 0:1000 visibility full track NTrep2_ES366 parent raoComposite on bigDataUrl ES366_hg18_accepted_hits.bw shortLabel H1+NT siRNA rep2 longLabel H1 ES cells + NT siRNA (ES366) type bigWig color 30,140,110 priority 102 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 4 transformFunc NONE windowingFunction mean+whiskers gridDefault off viewLimits 0:1000 visibility full track Brg1rep1_ES367 parent raoComposite on bigDataUrl ES367_hg18_accepted_hits.bw shortLabel H1+Brg1 siRNA rep1 longLabel H1 ES cells + Brg1 siRNA (ES367) type bigWig color 227,105,61 priority 103 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 4 transformFunc NONE windowingFunction mean+whiskers gridDefault off viewLimits 0:1000 visibility full track Brg1rep2_ES368 parent raoComposite on bigDataUrl ES368_hg18_accepted_hits.bw shortLabel H1+Brg1 siRNA rep2 longLabel H1 ES cells + Brg1 siRNA (ES368) type bigWig color 232,87,55 priority 104 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 4 transformFunc NONE windowingFunction mean+whiskers gridDefault off viewLimits 0:1000 visibility full ########################## ## Overlay multiple tracks: track raoMultiWig container multiWig aggregate transparentOverlay shortLabel RNAseq Aggregate Signal longLabel RNAseq Aggregate Signals for NT and Brg1 siRNA showSubtrackColorOnUi on type bigWig viewLimits 0:2400 maxHeightPixels 100:48:8 graphTypeDefault bar smoothingWindow 8 transformFunc NONE windowingFunction maximum visibility full gridDefault off track NTrep1multiWig table NTrep1_ES365 bigDataUrl ES365_hg18_accepted_hits.bw type bigWig parent raoMultiWig color 100,190,165 priority 511 track NTrep2multiWig table NTrep2_ES366 bigDataUrl ES366_hg18_accepted_hits.bw type bigWig parent raoMultiWig color 100,205,150 priority 512 track Brg1rep1multiWig table Brg1rep2_ES367 bigDataUrl ES367_hg18_accepted_hits.bw type bigWig parent raoMultiWig color 250,140,100 priority 513 track Brg1rep2multiWig table Brg1rep2_ES366 bigDataUrl ES368_hg18_accepted_hits.bw type bigWig parent raoMultiWig color 255,120,90 priority 514 ################## ## Composite Track # GSE29422_Smad2_3_4_ES_cells # track GSE29422_Smad2_3_4_ES_cells compositeTrack on shortLabel GSE29422_Smad2_3_4_ES_cells longLabel GSE29422_Smad2_3_4_ES_cells type bigBed allButtonPair on centerLabelsDense on dragAndDrop on priority 2000 visibility dense # # GSE29422_Smad2_3_4_ES_cells ## Composite Track ################## ################################### # bigBed peaks GSM727557_d0Smad2-3 track GSM727557_d0Smad2-3 parent GSE29422_Smad2_3_4_ES_cells on bigDataUrl GSM727557_d0Smad2-3.bb shortLabel GSM727557_d0Smad2-3 longLabel GSM727557_d0Smad2-3 type bigBed color 90,90,90 visibility dense priority 2001 # bigBed peaks GSM727557_d0Smad2-3 ################################### ################################### # bigBed peaks GSM727558_d0Smad2-3_goat track GSM727558_d0Smad2-3_goat parent GSE29422_Smad2_3_4_ES_cells on bigDataUrl GSM727558_d0Smad2-3_goat.bb shortLabel GSM727558_d0Smad2-3_goat longLabel GSM727558_d0Smad2-3_goat type bigBed color 90,90,90 visibility dense priority 2002 # bigBed peaks GSM727558_d0Smad2-3_goat ################################### ################################### # bigBed peaks GSM727559_d0Smad3 track GSM727559_d0Smad3 parent GSE29422_Smad2_3_4_ES_cells on bigDataUrl GSM727559_d0Smad3.bb shortLabel GSM727559_d0Smad3 longLabel GSM727559_d0Smad3 type bigBed color 90,90,90 visibility dense priority 2003 # bigBed peaks GSM727559_d0Smad3 ################################### ################################### # bigBed peaks GSM727561_d0Smad4 track GSM727561_d0Smad4 parent GSE29422_Smad2_3_4_ES_cells on bigDataUrl GSM727561_d0Smad4.bb shortLabel GSM727561_d0Smad4 longLabel GSM727561_d0Smad4 type bigBed color 90,90,90 visibility dense priority 2004 # bigBed peaks GSM727561_d0Smad4 ################################### ################################### # bigBed peaks GSM727564_d0Foxh1 track GSM727564_d0Foxh1 parent GSE29422_Smad2_3_4_ES_cells on bigDataUrl GSM727564_d0Foxh1.bb shortLabel GSM727564_d0Foxh1 longLabel GSM727564_d0Foxh1 type bigBed color 90,90,90 visibility dense priority 2005 # bigBed peaks GSM727564_d0Foxh1 ################################### ################################### # bigBed peaks GSM727572_d0K4.regions track GSM727572_d0K4.regions parent GSE29422_Smad2_3_4_ES_cells on bigDataUrl GSM727572_d0K4.regions.bb shortLabel GSM727572_d0K4.regions longLabel GSM727572_d0K4.regions type bigBed color 90,90,90 visibility dense priority 2006 # bigBed peaks GSM727572_d0K4.regions ################################### ################################### # bigBed peaks GSM727577_d0K27.regions track GSM727577_d0K27.regions parent GSE29422_Smad2_3_4_ES_cells on bigDataUrl GSM727577_d0K27.regions.bb shortLabel GSM727577_d0K27.regions longLabel GSM727577_d0K27.regions type bigBed color 90,90,90 visibility dense priority 2007 # bigBed peaks GSM727577_d0K27.regions ################################### ################################### # bigBed peaks GSM727583_d5Smad2-3 track GSM727583_d5Smad2-3 parent GSE29422_Smad2_3_4_ES_cells on bigDataUrl GSM727583_d5Smad2-3.bb shortLabel GSM727583_d5Smad2-3 longLabel GSM727583_d5Smad2-3 type bigBed color 90,90,90 visibility dense priority 2008 # bigBed peaks GSM727583_d5Smad2-3 ################################### ################################### # bigBed peaks GSM727584_d5Smad2-3_goat track GSM727584_d5Smad2-3_goat parent GSE29422_Smad2_3_4_ES_cells on bigDataUrl GSM727584_d5Smad2-3_goat.bb shortLabel GSM727584_d5Smad2-3_goat longLabel GSM727584_d5Smad2-3_goat type bigBed color 90,90,90 visibility dense priority 2009 # bigBed peaks GSM727584_d5Smad2-3_goat ################################### ################################### # bigBed peaks GSM727585_d5Smad3 track GSM727585_d5Smad3 parent GSE29422_Smad2_3_4_ES_cells on bigDataUrl GSM727585_d5Smad3.bb shortLabel GSM727585_d5Smad3 longLabel GSM727585_d5Smad3 type bigBed color 90,90,90 visibility dense priority 2010 # bigBed peaks GSM727585_d5Smad3 ################################### ################################### # bigBed peaks GSM727586_d5Smad4 track GSM727586_d5Smad4 parent GSE29422_Smad2_3_4_ES_cells on bigDataUrl GSM727586_d5Smad4.bb shortLabel GSM727586_d5Smad4 longLabel GSM727586_d5Smad4 type bigBed color 90,90,90 visibility dense priority 2011 # bigBed peaks GSM727586_d5Smad4 ################################### ################################### # bigBed peaks GSM727589_d5Foxh1 track GSM727589_d5Foxh1 parent GSE29422_Smad2_3_4_ES_cells on bigDataUrl GSM727589_d5Foxh1.bb shortLabel GSM727589_d5Foxh1 longLabel GSM727589_d5Foxh1 type bigBed color 90,90,90 visibility dense priority 2012 # bigBed peaks GSM727589_d5Foxh1 ################################### ################################### # bigBed peaks GSM727596_d5K4.regions track GSM727596_d5K4.regions parent GSE29422_Smad2_3_4_ES_cells on bigDataUrl GSM727596_d5K4.regions.bb shortLabel GSM727596_d5K4.regions longLabel GSM727596_d5K4.regions type bigBed color 90,90,90 visibility dense priority 2013 # bigBed peaks GSM727596_d5K4.regions ################################### ################################### # bigBed peaks GSM727601_d5K27.regions track GSM727601_d5K27.regions parent GSE29422_Smad2_3_4_ES_cells on bigDataUrl GSM727601_d5K27.regions.bb shortLabel GSM727601_d5K27.regions longLabel GSM727601_d5K27.regions type bigBed color 90,90,90 visibility dense priority 2014 # bigBed peaks GSM727601_d5K27.regions ###################################