#########################################
## Composite track for all RNA-seq tracks:
track             raoComposite
compositeTrack    on
shortLabel        Rao Composite RNAseq
longLabel         Composite of multiple RNA-seq tracks
type              bigWig
viewLevel         0:1000
allButtonPair     on
centerLabelsDense on


#########################################
## RNA-seq tracks:
track             NTrep1_ES365
parent            raoComposite on
bigDataUrl        ES365_accepted_hits.bw
shortLabel        H1+NT siRNA rep1
longLabel         H1 ES cells + NT siRNA (ES365)
type              bigWig
color             30,160,120
priority          101
alwaysZero        on
graphTypeDefault  bar
maxHeightPixels   100:24:8
smoothingWindow   4
transformFunc     NONE
windowingFunction mean+whiskers
gridDefault       off
viewLimits        0:1000
visibility        full

track             NTrep2_ES366
parent            raoComposite on
bigDataUrl        ES366_accepted_hits.bw
shortLabel        H1+NT siRNA rep2
longLabel         H1 ES cells + NT siRNA (ES366)
type              bigWig
color             30,140,110
priority          102
alwaysZero        on
graphTypeDefault  bar
maxHeightPixels   100:24:8
smoothingWindow   4
transformFunc     NONE
windowingFunction mean+whiskers
gridDefault       off
viewLimits        0:1000
visibility        full

track             Brg1rep1_ES367
parent            raoComposite on
bigDataUrl        ES367_accepted_hits.bw
shortLabel        H1+Brg1 siRNA rep1
longLabel         H1 ES cells + Brg1 siRNA (ES367)
type              bigWig
color             227,105,61
priority          103
alwaysZero        on
graphTypeDefault  bar
maxHeightPixels   100:24:8
smoothingWindow   4
transformFunc     NONE
windowingFunction mean+whiskers
gridDefault       off
viewLimits        0:1000
visibility        full

track             Brg1rep2_ES368
parent            raoComposite on
bigDataUrl        ES368_accepted_hits.bw
shortLabel        H1+Brg1 siRNA rep2
longLabel         H1 ES cells + Brg1 siRNA (ES368)
type              bigWig
color             232,87,55
priority          104
alwaysZero        on
graphTypeDefault  bar
maxHeightPixels   100:24:8
smoothingWindow   4
transformFunc     NONE
windowingFunction mean+whiskers
gridDefault       off
viewLimits        0:1000
visibility        full

##########################
## Overlay multiple tracks:
track                  raoMultiWig
container              multiWig
aggregate              transparentOverlay
shortLabel             RNAseq Aggregate Signal
longLabel              RNAseq Aggregate Signals for NT and Brg1 siRNA
showSubtrackColorOnUi  on
type                   bigWig
viewLimits             0:2400
maxHeightPixels        100:48:8
graphTypeDefault       bar
smoothingWindow        8
transformFunc          NONE
windowingFunction      maximum
visibility             full
gridDefault            off

   track             NTrep1multiWig
   table             NTrep1_ES365
   bigDataUrl        ES365_accepted_hits.bw
   type              bigWig
   parent            raoMultiWig
   color             100,190,165
   priority          511

   track             NTrep2multiWig
   table             NTrep2_ES366
   bigDataUrl        ES366_accepted_hits.bw
   type              bigWig
   parent            raoMultiWig
   color             100,205,150
   priority          512

   track             Brg1rep1multiWig
   table             Brg1rep2_ES367
   bigDataUrl        ES367_accepted_hits.bw
   type              bigWig
   parent            raoMultiWig
   color             250,140,100
   priority          513

   track             Brg1rep2multiWig
   table             Brg1rep2_ES366
   bigDataUrl        ES368_accepted_hits.bw
   type              bigWig
   parent            raoMultiWig
   color             255,120,90
   priority          514