track dataATACRaw compositeTrack on shortLabel ATACseqRaw longLabel ATAC-seq data (raw depth) priority 100 subGroup1 view View RAW=rawDepth subGroup2 Sex Sex M=M F=F subGroup3 Age Age E14=E14.5 E16=E16.5 subGroup4 Rep Rep 1=1 2=2 dimensions dimX=Sex dimY=Age dimA=Rep sortOrder Sex=+ Age=+ Rep=+ type bigWig track dataATACRaw_ViewDepth parent dataATACRaw shortLabel FootprintsRaw longLabel ATAC-seq footprints (raw) view RAW visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 150:30:11 viewLimits 0:40 showSubtrackColorOnUi on viewUi on track E14M-1.DR parent dataATACRaw_ViewDepth bigDataUrl data/ATACseq/E14M-1.bwt.mm10.footprint.bigWig shortLabel E14M-1 raw longLabel raw footprints depth: E14M-1 type bigWig color 0,128,255 priority 101 visibility hide subGroups Sex=M Age=E14 Rep=1 view=RAW track E14M-2.DR parent dataATACRaw_ViewDepth bigDataUrl data/ATACseq/E14M-2.bwt.mm10.footprint.bigWig shortLabel E14M-2 raw longLabel raw footprints depth: E14M-2 type bigWig color 0,128,255 priority 102 visibility hide subGroups Sex=M Age=E14 Rep=2 view=RAW track E16M-1.DR parent dataATACRaw_ViewDepth bigDataUrl data/ATACseq/E16M-1.bwt.mm10.footprint.bigWig shortLabel E16M-1 raw longLabel raw footprints depth: E16M-1 type bigWig color 0,0,204 priority 103 visibility hide subGroups Sex=M Age=E16 Rep=1 view=RAW track E16M-2.DR parent dataATACRaw_ViewDepth bigDataUrl data/ATACseq/E16M-2.bwt.mm10.footprint.bigWig shortLabel E16M-2 raw longLabel raw footprints depth: E16M-2 type bigWig color 0,0,204 priority 104 visibility hide subGroups Sex=M Age=E16 Rep=2 view=RAW track E14F-1.DR parent dataATACRaw_ViewDepth bigDataUrl data/ATACseq/E14F-1.bwt.mm10.footprint.bigWig shortLabel E14F-1 raw longLabel raw footprints depth: E14F-1 type bigWig color 255,102,178 priority 105 visibility hide subGroups Sex=F Age=E14 Rep=1 view=RAW track E14F-2.DR parent dataATACRaw_ViewDepth bigDataUrl data/ATACseq/E14F-2.bwt.mm10.footprint.bigWig shortLabel E14F-2 raw longLabel raw footprints depth: E14F-2 type bigWig color 255,102,178 priority 106 visibility hide subGroups Sex=F Age=E14 Rep=2 view=RAW track E16F-1.DR parent dataATACRaw_ViewDepth bigDataUrl data/ATACseq/E16F-1.bwt.mm10.footprint.bigWig shortLabel E16F-1 raw longLabel raw footprints depth: E16F-1 type bigWig color 255,0,127 priority 107 visibility hide subGroups Sex=F Age=E16 Rep=1 view=RAW track E16F-2.DR parent dataATACRaw_ViewDepth bigDataUrl data/ATACseq/E16F-2.bwt.mm10.footprint.bigWig shortLabel E16F-2 raw longLabel raw footprints depth: E16F-2 type bigWig color 255,0,127 priority 108 visibility hide subGroups Sex=F Age=E16 Rep=2 view=RAW track dataATACNorm compositeTrack on shortLabel ATACseqNorm longLabel ATAC-seq data (normalized depth) priority 200 subGroup1 view View NRM=normDepth subGroup2 Sex Sex M=M F=F subGroup3 Age Age E14=E14.5 E16=E16.5 subGroup4 Rep Rep 1=1 2=2 dimensions dimX=Sex dimY=Age dimA=Rep sortOrder Sex=+ Age=+ Rep=+ type bigWig track dataATACNorm_ViewDepth parent dataATACNorm shortLabel Footprints longLabel ATAC-seq footprints (normalized) view NRM visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 150:30:11 viewLimits 0:40 showSubtrackColorOnUi on viewUi on track E14M-1.DN parent dataATACNorm_ViewDepth bigDataUrl data/ATACseq/E14M-1.bwt.mm10.footprint.norm.bigWig shortLabel E14M-1 longLabel footprints depth: E14M-1 type bigWig color 0,128,255 priority 201 visibility hide subGroups Sex=M Age=E14 Rep=1 view=NRM track E14M-2.DN parent dataATACNorm_ViewDepth bigDataUrl data/ATACseq/E14M-2.bwt.mm10.footprint.norm.bigWig shortLabel E14M-2 longLabel footprints depth: E14M-2 type bigWig color 0,128,255 priority 202 visibility hide subGroups Sex=M Age=E14 Rep=2 view=NRM track E16M-1.DN parent dataATACNorm_ViewDepth bigDataUrl data/ATACseq/E16M-1.bwt.mm10.footprint.norm.bigWig shortLabel E16M-1 longLabel footprints depth: E16M-1 type bigWig color 0,0,204 priority 203 visibility hide subGroups Sex=M Age=E16 Rep=1 view=NRM track E16M-2.DN parent dataATACNorm_ViewDepth bigDataUrl data/ATACseq/E16M-2.bwt.mm10.footprint.norm.bigWig shortLabel E16M-2 longLabel footprints depth: E16M-2 type bigWig color 0,0,204 priority 204 visibility hide subGroups Sex=M Age=E16 Rep=2 view=NRM track E14F-1.DN parent dataATACNorm_ViewDepth bigDataUrl data/ATACseq/E14F-1.bwt.mm10.footprint.norm.bigWig shortLabel E14F-1 longLabel footprints depth: E14F-1 type bigWig color 255,102,178 priority 205 visibility hide subGroups Sex=F Age=E14 Rep=1 view=NRM track E14F-2.DN parent dataATACNorm_ViewDepth bigDataUrl data/ATACseq/E14F-2.bwt.mm10.footprint.norm.bigWig shortLabel E14F-2 longLabel footprints depth: E14F-2 type bigWig color 255,102,178 priority 206 visibility hide subGroups Sex=F Age=E14 Rep=2 view=NRM track E16F-1.DN parent dataATACNorm_ViewDepth bigDataUrl data/ATACseq/E16F-1.bwt.mm10.footprint.norm.bigWig shortLabel E16F-1 longLabel footprints depth: E16F-1 type bigWig color 255,0,127 priority 207 visibility hide subGroups Sex=F Age=E16 Rep=1 view=NRM track E16F-2.DN parent dataATACNorm_ViewDepth bigDataUrl data/ATACseq/E16F-2.bwt.mm10.footprint.norm.bigWig shortLabel E16F-2 longLabel footprints depth: E16F-2 type bigWig color 255,0,127 priority 208 visibility hide subGroups Sex=F Age=E16 Rep=2 view=NRM track dataATACPeaks compositeTrack on shortLabel ATAC peaks BySample longLabel ATAC-seq peaks priority 300 subGroup1 Type Type Sample=Sample dimensions dimY=Type sortOrder Type=+ visibility dense type bed 3 track E14M-1.P parent dataATACPeaks bigDataUrl data/ATACseq/E14M-1.MACS2_FDRe-4.bigBed shortLabel E14M-1 peaks longLabel MACS2 peaks: E14M-1 type bigBed color 0,128,255 priority 301 visibility hide subGroups Type=Sample track E14M-2.P parent dataATACPeaks bigDataUrl data/ATACseq/E14M-2.MACS2_FDRe-4.bigBed shortLabel E14M-2 peaks longLabel MACS2 peaks: E14M-2 type bigBed color 0,128,255 priority 302 visibility hide subGroups Type=Sample track E16M-1.P parent dataATACPeaks bigDataUrl data/ATACseq/E16M-1.MACS2_FDRe-4.bigBed shortLabel E16M-1 peaks longLabel MACS2 peaks: E16M-1 type bigBed color 0,0,204 priority 303 visibility hide subGroups Type=Sample track E16M-2.P parent dataATACPeaks bigDataUrl data/ATACseq/E16M-2.MACS2_FDRe-4.bigBed shortLabel E16M-2 peaks longLabel MACS2 peaks: E16M-2 type bigBed color 0,0,204 priority 304 visibility hide subGroups Type=Sample track E14F-1.P parent dataATACPeaks bigDataUrl data/ATACseq/E14F-1.MACS2_FDRe-4.bigBed shortLabel E14F-1 peaks longLabel MACS2 peaks: E14F-1 type bigBed color 255,102,178 priority 305 visibility hide subGroups Type=Sample track E14F-2.P parent dataATACPeaks bigDataUrl data/ATACseq/E14F-2.MACS2_FDRe-4.bigBed shortLabel E14F-2 peaks longLabel MACS2 peaks: E14F-2 type bigBed color 255,102,178 priority 306 visibility hide subGroups Type=Sample track E16F-1.P parent dataATACPeaks bigDataUrl data/ATACseq/E16F-1.MACS2_FDRe-4.bigBed shortLabel E16F-1 peaks longLabel MACS2 peaks: E16F-1 type bigBed color 255,0,127 priority 307 visibility hide subGroups Type=Sample track E16F-2.P parent dataATACPeaks bigDataUrl data/ATACseq/E16F-2.MACS2_FDRe-4.bigBed shortLabel E16F-2 peaks longLabel MACS2 peaks: E16F-2 type bigBed color 255,0,127 priority 308 visibility hide subGroups Type=Sample track dataATACDiffPeaks compositeTrack on shortLabel ATAC peaks Diff longLabel differential peaks priority 400 subGroup1 Type Type Diff=Diff Specific=Specific All=All dimensions dimY=Type sortOrder Type=+ visibility dense type bigBed 9+ track uniAll.P parent dataATACDiffPeaks bigDataUrl data/ATACseq/MACS2_unified.bigBed shortLabel unified peaks longLabel MACS2 peaks: unified type bigBed color 64,64,64 priority 400 visibility hide subGroups Type=All track diffE14.P parent dataATACDiffPeaks bigDataUrl data/ATACseq/E14.CmpSex.edgeR.bigBed shortLabel E14.5 M-vs-F peaks longLabel MACS2 peaks: E14.5M vs E14.5F type bigBed 9+ itemRgb On priority 400 visibility hide subGroups Type=Diff track diffE16.P parent dataATACDiffPeaks bigDataUrl data/ATACseq/E16.CmpSex.edgeR.bigBed shortLabel E16.5 M-vs-F peaks longLabel MACS2 peaks: E16.5M vs E16.5F type bigBed 9+ itemRgb On priority 400 visibility hide subGroups Type=Diff track diffM.P parent dataATACDiffPeaks bigDataUrl data/ATACseq/Male.CmpAge.edgeR.bigBed shortLabel Male E16.5-vs-E14.5 peaks longLabel MACS2 peaks: E16.5M vs E14.5M type bigBed 9+ itemRgb On priority 400 visibility hide subGroups Type=Diff track diffF.P parent dataATACDiffPeaks bigDataUrl data/ATACseq/Female.CmpAge.edgeR.bigBed shortLabel Female E16.5-vs-E14.5 peaks longLabel MACS2 peaks: E16.5F vs E14.5F type bigBed 9+ itemRgb On priority 400 visibility hide subGroups Type=Diff track specSE1.P parent dataATACDiffPeaks bigDataUrl data/ATACseq/ATACseq_seH1.bigBed shortLabel Shannon Entropy < 1 longLabel MACS2 peaks: specific by Shannon Entropy (H<1) type bigBed 9+ itemRgb On priority 400 visibility hide subGroups Type=Specific