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    track	E14M-1.P
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    track	E16M-1.P
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      parent	dataRNAseqAm_ViewDepth
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      shortLabel	Amhr2-3 RNAseq, minus
      longLabel	normalized RNA-seq depth: Amhr2-3 (minus)
      type	bigWig
      color	204,102,0
      priority	712
      visibility	hide
      subGroups	Cell=A Rep=3 Strand=minus view=NORM



track	dataChIPseq
compositeTrack	on
shortLabel	ChIPseq
longLabel	ChIPseq data
priority	600
subGroup1	view View COV=depth PK=peak
subGroup2	SexAge SexAge M14=M14.5 F14=F14.5 M16=M16.5 F16=F16.5 I14=Input14.5 I16=Input16.5
subGroup3	IP IP NR2F2=NR2F2 AR=AR
subGroup4	Rep Rep 1=1 2=2 M=M
dimensions	dimX=IP dimY=SexAge dimA=Rep
sortOrder	SexAge=+ Rep=+ view=+
configurable	on
type	bed 3

   track	dataChIPseq_ViewDepth
   parent	dataChIPseq
   shortLabel	ChIPseq Depth
   longLabel	ChIP-seq normalized depth
   view	COV
   visibility	full
   type	bigWig
   allButtonPair	on
   centerLabelsDense	on
   dragAndDrop	on
   alwaysZero	on
   graphTypeDefault	bar
   maxHeightPixels	150:30:11
   viewLimits	0:40
   showSubtrackColorOnUi	on
   viewUi	on

      track	F141.NR2F2
      parent	dataChIPseq_ViewDepth
      bigDataUrl	data/ChIPseq/E14.5_female_NR2F2-rep1.bwt.mm10.rmdup.ext200.norm25M.bigWig
      shortLabel	Female E14.5-1 NR2F2
      longLabel	normalized ChIP-seq depth: Female E14.5-1 NR2F2
      type	bigWig
      color	255,102,178
      priority	601
      visibility	hide
      subGroups	SexAge=F14 IP=NR2F2 Rep=1 view=COV

      track	F142.NR2F2
      parent	dataChIPseq_ViewDepth
      bigDataUrl	data/ChIPseq/E14.5_female_NR2F2-rep2.bwt.mm10.rmdup.ext200.norm25M.bigWig
      shortLabel	Female E14.5-2 NR2F2
      longLabel	normalized ChIP-seq depth: Female E14.5-2 NR2F2
      type	bigWig
      color	255,102,178
      priority	602
      visibility	hide
      subGroups	SexAge=F14 IP=NR2F2 Rep=2 view=COV

      track	M141.NR2F2
      parent	dataChIPseq_ViewDepth
      bigDataUrl	data/ChIPseq/E14.5_male_NR2F2-rep1.bwt.mm10.rmdup.ext200.norm25M.bigWig
      shortLabel	Male E14.5-1 NR2F2
      longLabel	normalized ChIP-seq depth: Male E14.5-1 NR2F2
      type	bigWig
      color	0,128,255
      priority	603
      visibility	hide
      subGroups	SexAge=M14 IP=NR2F2 Rep=1 view=COV

      track	M142.NR2F2
      parent	dataChIPseq_ViewDepth
      bigDataUrl	data/ChIPseq/E14.5_male_NR2F2-rep2.bwt.mm10.rmdup.ext200.norm25M.bigWig
      shortLabel	Male E14.5-2 NR2F2
      longLabel	normalized ChIP-seq depth: Male E14.5-2 NR2F2
      type	bigWig
      color	0,128,255
      priority	604
      visibility	hide
      subGroups	SexAge=M14 IP=NR2F2 Rep=2 view=COV

      track	I141.NR2F2
      parent	dataChIPseq_ViewDepth
      bigDataUrl	data/ChIPseq/pooled_input-rep1-NR2F2.bwt.mm10.rmdup.ext200.norm25M.bigWig
      shortLabel	input E14.5-1 (NR2F2)
      longLabel	normalized ChIP-seq depth: input E14.5-1 (NR2F2)
      type	bigWig
      color	102,102,102
      priority	605
      visibility	hide
      subGroups	SexAge=I14 IP=NR2F2 Rep=1 view=COV

      track	I142.NR2F2
      parent	dataChIPseq_ViewDepth
      bigDataUrl	data/ChIPseq/pooled_input-rep2-NR2F2.bwt.mm10.rmdup.ext200.norm25M.bigWig
      shortLabel	input E14.5-2 (NR2F2)
      longLabel	normalized ChIP-seq depth: input E14.5-2 (NR2F2)
      type	bigWig
      color	102,102,102
      priority	606
      visibility	hide
      subGroups	SexAge=I14 IP=NR2F2 Rep=2 view=COV

      track	F14M.NR2F2
      parent	dataChIPseq_ViewDepth
      bigDataUrl	data/ChIPseq/E14.5_female_NR2F2.bwt.mm10.rmdup.ext200.norm50M.bigWig
      shortLabel	Female E14.5 NR2F2
      longLabel	normalized ChIP-seq depth: Female E14.5 NR2F2
      type	bigWig
      color	255,102,178
      priority	607
      visibility	hide
      subGroups	SexAge=F14 IP=NR2F2 Rep=M view=COV

      track	M14M.NR2F2
      parent	dataChIPseq_ViewDepth
      bigDataUrl	data/ChIPseq/E14.5_male_NR2F2.bwt.mm10.rmdup.ext200.norm50M.bigWig
      shortLabel	Male E14.5 NR2F2
      longLabel	normalized ChIP-seq depth: Male E14.5 NR2F2
      type	bigWig
      color	0,128,255
      priority	608
      visibility	hide
      subGroups	SexAge=M14 IP=NR2F2 Rep=M view=COV

      track	I14M.NR2F2
      parent	dataChIPseq_ViewDepth
      bigDataUrl	data/ChIPseq/pooled_input-NR2F2.bwt.mm10.rmdup.ext200.norm50M.bigWig
      shortLabel	input E14.5 (NR2F2)
      longLabel	normalized ChIP-seq depth: input E14.5 (NR2F2)
      type	bigWig
      color	102,102,102
      priority	609
      visibility	hide
      subGroups	SexAge=I14 IP=NR2F2 Rep=M view=COV



      track	M161.AR
      parent	dataChIPseq_ViewDepth
      bigDataUrl	data/ChIPseq/AR-rep1.bwt.mm10.rmdup.ext200.norm10M.bigWig
      shortLabel	Male E16.5-1 AR
      longLabel	normalized ChIP-seq depth: Male E16.5-1 AR
      type	bigWig
      color	0,0,204
      priority	610
      visibility	hide
      subGroups	SexAge=M16 IP=AR Rep=1 view=COV

      track	M162.AR
      parent	dataChIPseq_ViewDepth
      bigDataUrl	data/ChIPseq/AR-rep2.bwt.mm10.rmdup.ext200.norm10M.bigWig
      shortLabel	Male E16.5-2 AR
      longLabel	normalized ChIP-seq depth: Male E16.5-2 AR
      type	bigWig
      color	0,0,204
      priority	611
      visibility	hide
      subGroups	SexAge=M16 IP=AR Rep=2 view=COV

      track	M16M.AR
      parent	dataChIPseq_ViewDepth
      bigDataUrl	data/ChIPseq/AR.merged.bwt.mm10.rmdup.ext200.norm10M.bigWig
      shortLabel	Male E16.5 AR
      longLabel	normalized ChIP-seq depth: Male E16.5 AR
      type	bigWig
      color	0,0,204
      priority	612
      visibility	hide
      subGroups	SexAge=M16 IP=AR Rep=M view=COV

      track	I161.AR
      parent	dataChIPseq_ViewDepth
      bigDataUrl	data/ChIPseq/input-AR.bwt.mm10.rmdup.ext200.norm10M.bigWig
      shortLabel	input E16.5 (AR)
      longLabel	normalized ChIP-seq depth: input E16.5 (AR)
      type	bigWig
      color	102,102,102
      priority	613
      visibility	hide
      subGroups	SexAge=I16 IP=AR Rep=1 view=COV

   track	dataChIPseq_ViewDepthPeaks
   parent	dataChIPseq
   shortLabel	ChIP-seq Peaks
   longLabel	ChIP-seq Peaks
   view	PK
   visibility	dense
   type	bigBed 3
   allButtonPair	on
   centerLabelsDense	on
   dragAndDrop	on
   showSubtrackColorOnUi	on
   viewUi	on

       track	E14F.NR2F2.pk
       parent	dataChIPseq_ViewDepthPeaks
       bigDataUrl	data/ChIPseq/E14.5_female_NR2F2.HOMER_e-5.bigBed
       shortLabel	Female E14.5 NR2F2 peaks
       longLabel	HOMER peak calls: Female E14.5 NR2F2 peaks
       type	bigBed 3
       color	255,102,178
       priority	614
       visibility	dense
       subGroups	SexAge=F14 IP=NR2F2 Rep=M view=PK

       track	E14M.NR2F2.pk
       parent	dataChIPseq_ViewDepthPeaks
       bigDataUrl	data/ChIPseq/E14.5_male_NR2F2.HOMER_e-5.bigBed
       shortLabel	Male E14.5 NR2F2 peaks
       longLabel	HOMER peak calls: Male E14.5 NR2F2 peaks
       type	bigBed 3
       color	0,128,255
       priority	615
       visibility	dense
       subGroups	SexAge=M14 IP=NR2F2 Rep=M view=PK

       track	E16M.AR.pk
       parent	dataChIPseq_ViewDepthPeaks
	  bigDataUrl	data/ChIPseq/AR.homer-peakcalls.fdr_e-5.300bp.bigBed
       shortLabel	Male E16.5 AR peaks
	  longLabel	HOMER peak calls: Male E16.5 AR peaks
       type	bigBed 3
       color	0,0,204
	  priority	616
       visibility	dense
       subGroups	SexAge=M16 IP=AR Rep=M view=PK



