track dataATACNorm compositeTrack on shortLabel ATACseqNorm longLabel ATAC-seq data (normalized depth) priority 100 subGroup1 view View NRM=normDepth subGroup2 Group Group MBD=MBD WT=WT subGroup4 Rep Rep 1=1 2=2 3=3 dimensions dimX=Group dimY=Rep sortOrder Group=+ Rep=+ type bigWig track dataATACNorm_ViewDepth parent dataATACNorm shortLabel Footprints longLabel ATAC-seq footprints (normalized) view NRM visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 150:40:11 viewLimits 0:80 showSubtrackColorOnUi on viewUi on track MBD1.DN parent dataATACNorm_ViewDepth bigDataUrl data/MBD1.bwt.mm9.footprint.norm60M.bigWig shortLabel MBD1 ATAC 9mers longLabel footprints depth: MBD1 type bigWig color 204,0,0 priority 101 visibility full subGroups Group=MBD Rep=1 view=NRM track MBD2.DN parent dataATACNorm_ViewDepth bigDataUrl data/MBD2.bwt.mm9.footprint.norm60M.bigWig shortLabel MBD2 ATAC 9mers longLabel footprints depth: MBD2 type bigWig color 204,0,0 priority 102 visibility full subGroups Group=MBD Rep=2 view=NRM track MBD3.DN parent dataATACNorm_ViewDepth bigDataUrl data/MBD3.bwt.mm9.footprint.norm60M.bigWig shortLabel MBD3 ATAC 9mers longLabel footprints depth: MBD3 type bigWig color 204,0,0 priority 103 visibility full subGroups Group=MBD Rep=3 view=NRM track WT1.DN parent dataATACNorm_ViewDepth bigDataUrl data/WT1.bwt.mm9.footprint.norm60M.bigWig shortLabel WT1 ATAC 9mers longLabel footprints depth: WT1 type bigWig color 0,0,204 priority 104 visibility full subGroups Group=WT Rep=1 view=NRM track WT2.DN parent dataATACNorm_ViewDepth bigDataUrl data/WT2.bwt.mm9.footprint.norm60M.bigWig shortLabel WT2 ATAC 9mers longLabel footprints depth: WT2 type bigWig color 0,0,204 priority 105 visibility full subGroups Group=WT Rep=2 view=NRM track WT3.DN parent dataATACNorm_ViewDepth bigDataUrl data/WT3.bwt.mm9.footprint.norm60M.bigWig shortLabel WT3 ATAC 9mers longLabel footprints depth: WT3 type bigWig color 0,0,204 priority 106 visibility full subGroups Group=WT Rep=3 view=NRM track dataATACPeaks compositeTrack on shortLabel ATAC peaks BySample longLabel ATAC-seq peaks priority 200 subGroup1 Type Type Sample=Sample dimensions dimY=Type sortOrder Type=+ visibility hide type bed 3 track MBD1.P parent dataATACPeaks bigDataUrl data/MBD1.MACS2.bigBed shortLabel MBD1 peaks longLabel MACS2 peaks: MBD1 type bigBed color 204,0,0 priority 201 visibility hide subGroups Type=Sample track MBD2.P parent dataATACPeaks bigDataUrl data/MBD2.MACS2.bigBed shortLabel MBD2 peaks longLabel MACS2 peaks: MBD2 type bigBed color 204,0,0 priority 202 visibility hide subGroups Type=Sample track MBD3.P parent dataATACPeaks bigDataUrl data/MBD3.MACS2.bigBed shortLabel MBD3 peaks longLabel MACS2 peaks: MBD3 type bigBed color 204,0,0 priority 203 visibility hide subGroups Type=Sample track WT1.P parent dataATACPeaks bigDataUrl data/WT1.MACS2.bigBed shortLabel WT1 peaks longLabel MACS2 peaks: WT1 type bigBed color 0,0,204 priority 204 visibility hide subGroups Type=Sample track WT2.P parent dataATACPeaks bigDataUrl data/WT2.MACS2.bigBed shortLabel WT2 peaks longLabel MACS2 peaks: WT2 type bigBed color 0,0,204 priority 205 visibility hide subGroups Type=Sample track WT3.P parent dataATACPeaks bigDataUrl data/WT3.MACS2.bigBed shortLabel WT3 peaks longLabel MACS2 peaks: WT3 type bigBed color 0,0,204 priority 206 visibility hide subGroups Type=Sample track dataATACPeaksU compositeTrack on shortLabel ATAC unified peaks longLabel unified peaks priority 300 subGroup1 Type Type All=All Filt=Filt ColorByDiff=ColorByDiff dimensions dimY=Type sortOrder Type=+ visibility dense type bigBed 9+ track uniAll.P parent dataATACPeaksU bigDataUrl data/unified_MACS2-all.min2of6.minSize50bp.bigBed shortLabel unified peaks longLabel MACS2 peaks: unified type bigBed color 0,0,0 priority 300 visibility dense subGroups Type=All track uniMin10DiffF1.P parent dataATACPeaksU bigDataUrl data/MBDvsWT.edgeR.9KPM_min10.FC_1.bigBed shortLabel MBD-vs-WT, FDR 0.01, FC 1 longLabel MACS2 peaks: MBD vs WT, FDR 0.01, FC 1 type bigBed 9+ itemRgb On priority 301 visibility dense subGroups Type=ColorByDiff track uniMin10DiffF1.2.P parent dataATACPeaksU bigDataUrl data/MBDvsWT.edgeR.9KPM_min10.FC_1.2.bigBed shortLabel MBD-vs-WT, FDR 0.01, FC 1.2 longLabel MACS2 peaks: MBD vs WT, FDR 0.01, FC 1.2 type bigBed 9+ itemRgb On priority 302 visibility dense subGroups Type=ColorByDiff track uniMin10DiffF1.5.P parent dataATACPeaksU bigDataUrl data/MBDvsWT.edgeR.9KPM_min10.FC_1.5.bigBed shortLabel MBD-vs-WT, FDR 0.01, FC 1.5 longLabel MACS2 peaks: MBD vs WT, FDR 0.01, FC 1.5 type bigBed 9+ itemRgb On priority 303 visibility dense subGroups Type=ColorByDiff track uniMin10DiffF2.P parent dataATACPeaksU bigDataUrl data/MBDvsWT.edgeR.9KPM_min10.FC_2.bigBed shortLabel MBD-vs-WT, FDR 0.01, FC 2 longLabel MACS2 peaks: MBD vs WT, FDR 0.01, FC 2 type bigBed 9+ itemRgb On priority 304 visibility dense subGroups Type=ColorByDiff track uniFilt.min2.P parent dataATACPeaksU bigDataUrl data/unified_MACS2-all.min2of6.minSize50bp.9KPM_min2.bigBed shortLabel unified 9KPM >= 2 longLabel MACS2 peaks: 9KPM >= 2 type bigBed 3 itemRgb On priority 305 visibility dense subGroups Type=Filt track uniFilt.min3.P parent dataATACPeaksU bigDataUrl data/unified_MACS2-all.min2of6.minSize50bp.9KPM_min3.bigBed shortLabel unified 9KPM >= 3 longLabel MACS2 peaks: 9KPM >= 3 type bigBed 3 itemRgb On priority 306 visibility dense subGroups Type=Filt track uniFilt.min5.P parent dataATACPeaksU bigDataUrl data/unified_MACS2-all.min2of6.minSize50bp.9KPM_min5.bigBed shortLabel unified 9KPM >= 5 longLabel MACS2 peaks: 9KPM >= 5 type bigBed 3 itemRgb On priority 307 visibility dense subGroups Type=Filt track uniFilt.min10.P parent dataATACPeaksU bigDataUrl data/unified_MACS2-all.min2of6.minSize50bp.9KPM_min10.bigBed shortLabel unified 9KPM >= 10 longLabel MACS2 peaks: 9KPM >= 10 type bigBed 3 itemRgb On priority 308 visibility dense subGroups Type=Filt track uniFilt.min15.P parent dataATACPeaksU bigDataUrl data/unified_MACS2-all.min2of6.minSize50bp.9KPM_min15.bigBed shortLabel unified 9KPM >= 15 longLabel MACS2 peaks: 9KPM >= 15 type bigBed 3 itemRgb On priority 309 visibility dense subGroups Type=Filt track uniFilt.min20.P parent dataATACPeaksU bigDataUrl data/unified_MACS2-all.min2of6.minSize50bp.9KPM_min20.bigBed shortLabel unified 9KPM >= 20 longLabel MACS2 peaks: 9KPM >= 20 type bigBed 3 itemRgb On priority 310 visibility dense subGroups Type=Filt