##================================================================== ## Beginning of track view of Dataset NS50746 (mm10) ##------------------------------------------------------------------ ## mm10 NS50746 Unstranded RNAseq track NS50746KO compositeTrack on shortLabel NS50746KO Unstranded RNAseq longLabel mm10 Unstranded RNAseq project NS50746KO priority 4000 visibility full configurable on type bed 3 subGroup1 view Views \ COV=Coverage \ JUNC=Junctions subGroup2 Group1 Group1 \ WT=WT \ KO=KO subGroup3 Group2 Group2 \ NA=NA subGroup4 Group3 Group3 \ NA=NA dimensions dimX=Group1 dimY=Group2 sortOrder Group1=+ Group2=+ Group3=- view=+ ## ==================== ## Views track coverage data track NS50746KOView1 parent NS50746KO shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewUi on ##-------- ## Coverage track track WTxRep1_str1.s0_coverage parent NS50746KOView1 on bigDataUrl WTxRep1_str1.bw shortLabel WTxRep1_str1.s0_coverage longLabel WTxRep1_str1.s0_coverage unstranded bw type bigWig color 76,0,153 priority 4012 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=WT Group2=NA Group3=s1Pos view=COV ##-------- ## Coverage track track WTxRep2_str1.s0_coverage parent NS50746KOView1 on bigDataUrl WTxRep2_str1.bw shortLabel WTxRep2_str1.s0_coverage longLabel WTxRep2_str1.s0_coverage unstranded bw type bigWig color 76,0,153 priority 4022 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=WT Group2=NA Group3=s1Pos view=COV ##-------- ## Coverage track track WTxRep3_str1.s0_coverage parent NS50746KOView1 on bigDataUrl WTxRep3_str1.bw shortLabel WTxRep3_str1.s0_coverage longLabel WTxRep3_str1.s0_coverage unstranded bw type bigWig color 76,0,153 priority 4032 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=WT Group2=NA Group3=s1Pos view=COV ##-------- ## Coverage track track WTxRep5_str1.s0_coverage parent NS50746KOView1 on bigDataUrl WTxRep5_str1.bw shortLabel WTxRep5_str1.s0_coverage longLabel WTxRep5_str1.s0_coverage unstranded bw type bigWig color 76,0,153 priority 4042 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=WT Group2=NA Group3=s1Pos view=COV ##-------- ## Coverage track track KOxRep1_str1.s0_coverage parent NS50746KOView1 on bigDataUrl KOxRep1_str1.bw shortLabel KOxRep1_str1.s0_coverage longLabel KOxRep1_str1.s0_coverage unstranded bw type bigWig color 153,0,76 priority 4052 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=KO Group2=NA Group3=s1Pos view=COV ##-------- ## Coverage track track KOxRep3_str1.s0_coverage parent NS50746KOView1 on bigDataUrl KOxRep3_str1.bw shortLabel KOxRep3_str1.s0_coverage longLabel KOxRep3_str1.s0_coverage unstranded bw type bigWig color 153,0,76 priority 4062 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=KO Group2=NA Group3=s1Pos view=COV ##-------- ## Coverage track track KOxRep4_str1.s0_coverage parent NS50746KOView1 on bigDataUrl KOxRep4_str1.bw shortLabel KOxRep4_str1.s0_coverage longLabel KOxRep4_str1.s0_coverage unstranded bw type bigWig color 153,0,76 priority 4072 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=KO Group2=NA Group3=s1Pos view=COV ##-------- ## Coverage track track KOxRep5_str1.s0_coverage parent NS50746KOView1 on bigDataUrl KOxRep5_str1.bw shortLabel KOxRep5_str1.s0_coverage longLabel KOxRep5_str1.s0_coverage unstranded bw type bigWig color 153,0,76 priority 4082 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:1000 visibility hide subGroups Group1=KO Group2=NA Group3=s1Pos view=COV ## ==================== ## Views track for RNAseq, junctions data track NS50746KOView2 parent NS50746KO shortLabel RNAseq_junctions view JUNC visibility pack type bigBed 12 allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on scoreFilter 20 scoreFilterLimits 1:1000 viewUi on ##-------- # combined junctions track track WTxRep1_junctions parent NS50746KOView2 on bigDataUrl WTxRep1.bb shortLabel WTxRep1 junctions longLabel WTxRep1 junctions type bigBed 12 visibility pack priority 4092 scoreMin 10 scoreMax 100 color 147,37,37 subGroups Group1=WT Group2=NA Group3=Unstranded view=JUNC ##-------- # combined junctions track track WTxRep2_junctions parent NS50746KOView2 on bigDataUrl WTxRep2.bb shortLabel WTxRep2 junctions longLabel WTxRep2 junctions type bigBed 12 visibility pack priority 4102 scoreMin 10 scoreMax 100 color 147,37,37 subGroups Group1=WT Group2=NA Group3=Unstranded view=JUNC ##-------- # combined junctions track track WTxRep3_junctions parent NS50746KOView2 on bigDataUrl WTxRep3.bb shortLabel WTxRep3 junctions longLabel WTxRep3 junctions type bigBed 12 visibility pack priority 4112 scoreMin 10 scoreMax 100 color 147,37,37 subGroups Group1=WT Group2=NA Group3=Unstranded view=JUNC ##-------- # combined junctions track track WTxRep5_junctions parent NS50746KOView2 on bigDataUrl WTxRep5.bb shortLabel WTxRep5 junctions longLabel WTxRep5 junctions type bigBed 12 visibility pack priority 4122 scoreMin 10 scoreMax 100 color 147,37,37 subGroups Group1=WT Group2=NA Group3=Unstranded view=JUNC ##-------- # combined junctions track track KOxRep1_junctions parent NS50746KOView2 on bigDataUrl KOxRep1.bb shortLabel KOxRep1 junctions longLabel KOxRep1 junctions type bigBed 12 visibility pack priority 4132 scoreMin 10 scoreMax 100 color 147,37,37 subGroups Group1=KO Group2=NA Group3=Unstranded view=JUNC ##-------- # combined junctions track track KOxRep3_junctions parent NS50746KOView2 on bigDataUrl KOxRep3.bb shortLabel KOxRep3 junctions longLabel KOxRep3 junctions type bigBed 12 visibility pack priority 4142 scoreMin 10 scoreMax 100 color 147,37,37 subGroups Group1=KO Group2=NA Group3=Unstranded view=JUNC ##-------- # combined junctions track track KOxRep4_junctions parent NS50746KOView2 on bigDataUrl KOxRep4.bb shortLabel KOxRep4 junctions longLabel KOxRep4 junctions type bigBed 12 visibility pack priority 4152 scoreMin 10 scoreMax 100 color 147,37,37 subGroups Group1=KO Group2=NA Group3=Unstranded view=JUNC ##-------- # combined junctions track track KOxRep5_junctions parent NS50746KOView2 on bigDataUrl KOxRep5.bb shortLabel KOxRep5 junctions longLabel KOxRep5 junctions type bigBed 12 visibility pack priority 4162 scoreMin 10 scoreMax 100 color 147,37,37 subGroups Group1=KO Group2=NA Group3=Unstranded view=JUNC