| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
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| 1 |  | AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-103 | -2.383e+02 | 0.0000 | 180.0 | 52.02% | 3701.8 | 7.70% | motif file (matrix) |
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| 2 |  | Jun-AP1(bZIP)/K562-cJun-ChIP-Seq/Homer | 1e-72 | -1.670e+02 | 0.0000 | 94.0 | 27.17% | 1034.0 | 2.15% | motif file (matrix) |
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| 3 |  | Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer | 1e-38 | -8.779e+01 | 0.0000 | 58.0 | 16.76% | 814.7 | 1.70% | motif file (matrix) |
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| 4 |  | FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-34 | -7.945e+01 | 0.0000 | 146.0 | 42.20% | 7036.7 | 14.64% | motif file (matrix) |
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| 5 |  | FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq/Homer | 1e-33 | -7.785e+01 | 0.0000 | 131.0 | 37.86% | 5809.0 | 12.09% | motif file (matrix) |
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| 6 |  | Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-33 | -7.679e+01 | 0.0000 | 118.0 | 34.10% | 4793.6 | 9.98% | motif file (matrix) |
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| 7 |  | Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq/Homer | 1e-28 | -6.579e+01 | 0.0000 | 103.0 | 29.77% | 4179.8 | 8.70% | motif file (matrix) |
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| 8 |  | NF-E2(bZIP)/K562-NFE2-ChIP-Seq/Homer | 1e-21 | -4.902e+01 | 0.0000 | 25.0 | 7.23% | 218.9 | 0.46% | motif file (matrix) |
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| 9 |  | Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer | 1e-18 | -4.181e+01 | 0.0000 | 22.0 | 6.36% | 206.5 | 0.43% | motif file (matrix) |
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| 10 |  | FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-17 | -3.932e+01 | 0.0000 | 58.0 | 16.76% | 2161.4 | 4.50% | motif file (matrix) |
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| 11 |  | MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer | 1e-15 | -3.647e+01 | 0.0000 | 37.0 | 10.69% | 941.9 | 1.96% | motif file (matrix) |
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| 12 |  | Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer | 1e-14 | -3.403e+01 | 0.0000 | 19.0 | 5.49% | 202.4 | 0.42% | motif file (matrix) |
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| 13 |  | GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-10 | -2.353e+01 | 0.0000 | 113.0 | 32.66% | 8705.1 | 18.12% | motif file (matrix) |
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| 14 |  | Gata1(Zf)/K562-GATA1-ChIP-Seq/Homer | 1e-9 | -2.258e+01 | 0.0000 | 55.0 | 15.90% | 2969.9 | 6.18% | motif file (matrix) |
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| 15 |  | Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-9 | -2.213e+01 | 0.0000 | 81.0 | 23.41% | 5479.8 | 11.40% | motif file (matrix) |
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| 16 |  | Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq/Homer | 1e-9 | -2.202e+01 | 0.0000 | 120.0 | 34.68% | 9716.1 | 20.22% | motif file (matrix) |
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| 17 |  | MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer | 1e-8 | -1.976e+01 | 0.0000 | 56.0 | 16.18% | 3306.8 | 6.88% | motif file (matrix) |
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| 18 |  | Gata2(Zf)/K562-GATA2-ChIP-Seq/Homer | 1e-8 | -1.974e+01 | 0.0000 | 57.0 | 16.47% | 3400.2 | 7.08% | motif file (matrix) |
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| 19 |  | GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-7 | -1.839e+01 | 0.0000 | 28.0 | 8.09% | 1087.8 | 2.26% | motif file (matrix) |
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| 20 |  | Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer | 1e-7 | -1.810e+01 | 0.0000 | 28.0 | 8.09% | 1102.3 | 2.29% | motif file (matrix) |
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| 21 |  | Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer | 1e-7 | -1.752e+01 | 0.0000 | 25.0 | 7.23% | 922.3 | 1.92% | motif file (matrix) |
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| 22 |  | CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-7 | -1.648e+01 | 0.0000 | 60.0 | 17.34% | 4032.7 | 8.39% | motif file (matrix) |
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| 23 |  | GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-6 | -1.559e+01 | 0.0000 | 15.0 | 4.34% | 379.3 | 0.79% | motif file (matrix) |
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| 24 |  | Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq/Homer | 1e-5 | -1.242e+01 | 0.0000 | 69.0 | 19.94% | 5529.5 | 11.51% | motif file (matrix) |
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| 25 |  | Tlx?/NPC-H3K4me1-ChIP-Seq/Homer | 1e-4 | -1.073e+01 | 0.0002 | 26.0 | 7.51% | 1438.4 | 2.99% | motif file (matrix) |
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| 26 |  | NF1(CTF)/LNCAP-NF1-ChIP-Seq/Homer | 1e-3 | -8.763e+00 | 0.0014 | 23.0 | 6.65% | 1351.4 | 2.81% | motif file (matrix) |
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| 27 |  | NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq/Homer | 1e-3 | -8.618e+00 | 0.0015 | 82.0 | 23.70% | 7761.0 | 16.15% | motif file (matrix) |
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| 28 |  | Hoxb4/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer | 1e-3 | -8.419e+00 | 0.0018 | 18.0 | 5.20% | 946.5 | 1.97% | motif file (matrix) |
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| 29 |  | AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq/Homer | 1e-3 | -8.159e+00 | 0.0023 | 36.0 | 10.40% | 2683.3 | 5.58% | motif file (matrix) |
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| 30 |  | p53(p53)/mES-cMyc-ChIP-Seq/Homer | 1e-3 | -8.045e+00 | 0.0024 | 5.0 | 1.45% | 80.4 | 0.17% | motif file (matrix) |
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| 31 |  | EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer | 1e-3 | -7.475e+00 | 0.0042 | 16.0 | 4.62% | 853.9 | 1.78% | motif file (matrix) |
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| 32 |  | CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-3 | -7.276e+00 | 0.0050 | 50.0 | 14.45% | 4344.5 | 9.04% | motif file (matrix) |
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| 33 |  | AP2gamma(AP2)/MCF7-TFAP2c-ChIP-Seq/Homer | 1e-2 | -6.891e+00 | 0.0071 | 36.0 | 10.40% | 2879.4 | 5.99% | motif file (matrix) |
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| 34 |  | p53(p53)/p53-ChIP-Chip/Homer | 1e-2 | -6.122e+00 | 0.0148 | 3.0 | 0.87% | 35.3 | 0.07% | motif file (matrix) |
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| 35 |  | Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer | 1e-2 | -5.985e+00 | 0.0165 | 17.0 | 4.91% | 1081.9 | 2.25% | motif file (matrix) |
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| 36 |  | Klf4(Zf)/mES-Klf4-ChIP-Seq/Homer | 1e-2 | -5.177e+00 | 0.0359 | 20.0 | 5.78% | 1473.5 | 3.07% | motif file (matrix) |
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| 37 |  | GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-2 | -4.773e+00 | 0.0523 | 8.0 | 2.31% | 394.4 | 0.82% | motif file (matrix) |
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