| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File | |
| 1 | | TR4(NR/DR1)/Hela-TR4-ChIP-Seq/Homer | 1e-3 | -6.976e+00 | 0.2139 | 75.0 | 0.70% | 188.9 | 0.48% | motif file (matrix) | |
| 2 | | Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer | 1e-2 | -6.114e+00 | 0.2534 | 1210.0 | 11.31% | 4125.6 | 10.46% | motif file (matrix) | |
| 3 | | Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq/Homer/ | 1e-2 | -5.975e+00 | 0.2534 | 1012.0 | 9.46% | 3426.9 | 8.69% | motif file (matrix) | |
| 4 | | Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq/Homer | 1e-2 | -5.203e+00 | 0.3150 | 187.0 | 1.75% | 569.7 | 1.44% | motif file (matrix) |