Homer de novo Motif Results

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 10727
Total background sequences = 39630
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-20	-4.794e+01	0.17%	0.01%	47.9bp (23.4bp)	MA0095.1_YY1/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
2		1e-20	-4.774e+01	0.14%	0.00%	49.4bp (0.0bp)	MA0039.1_Klf4/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
3		1e-18	-4.372e+01	0.13%	0.00%	49.1bp (0.0bp)	MA0071.1_RORA_1/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
4		1e-17	-4.026e+01	0.25%	0.03%	57.3bp (42.4bp)	PH0085.1_Irx4/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
5		1e-16	-3.884e+01	0.18%	0.01%	39.1bp (31.1bp)	PB0031.1_Hoxa3_1/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
6		1e-16	-3.721e+01	1.10%	0.46%	58.4bp (52.9bp)	PH0040.1_Hmbox1/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
7		1e-15	-3.655e+01	4.83%	3.31%	57.1bp (55.9bp)	FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer More Information \| Similar Motifs Found	motif file (matrix)
8		1e-15	-3.647e+01	2.48%	1.44%	57.8bp (56.2bp)	POL002.1_INR/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
9		1e-14	-3.427e+01	0.13%	0.01%	47.9bp (62.0bp)	PB0122.1_Foxk1_2/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
10		1e-14	-3.375e+01	0.20%	0.02%	48.7bp (56.4bp)	MA0161.1_NFIC/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
11		1e-14	-3.242e+01	10.77%	8.61%	54.9bp (55.6bp)	PB0013.1_Eomes_1/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
12		1e-13	-3.177e+01	0.14%	0.01%	52.5bp (7.8bp)	PB0188.1_Tcf7l2_2/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
13		1e-13	-3.177e+01	0.14%	0.01%	54.9bp (65.8bp)	MA0033.1_FOXL1/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
14		1e-13	-3.143e+01	0.30%	0.05%	51.6bp (56.3bp)	PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer More Information \| Similar Motifs Found	motif file (matrix)
15		1e-13	-3.140e+01	10.45%	8.35%	55.8bp (55.8bp)	PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq/Homer More Information \| Similar Motifs Found	motif file (matrix)
16		1e-12	-2.948e+01	5.48%	4.02%	55.7bp (54.9bp)	MA0132.1_Pdx1/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
17		1e-12	-2.913e+01	0.21%	0.03%	49.4bp (49.7bp)	PB0164.1_Smad3_2/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
18		1e-12	-2.885e+01	0.13%	0.01%	61.8bp (67.9bp)	MA0152.1_NFATC2/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
19		1e-12	-2.797e+01	2.82%	1.83%	56.5bp (56.2bp)	PB0105.1_Arid3a_2/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
20 *		1e-11	-2.612e+01	1.89%	1.12%	54.1bp (54.2bp)	Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq/Homer/ More Information \| Similar Motifs Found	motif file (matrix)
21 *		1e-11	-2.600e+01	0.12%	0.01%	52.8bp (60.2bp)	PH0083.1_Irx3_1/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
22 *		1e-10	-2.507e+01	0.13%	0.01%	50.9bp (21.5bp)	PB0036.1_Irf6_1/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
23 *		1e-10	-2.479e+01	0.08%	0.00%	49.0bp (35.6bp)	Nkx2.1(Homeobox)/H3122-NKX2.1-ChIP-Seq(GSE39998)/Homer More Information \| Similar Motifs Found	motif file (matrix)
24 *		1e-10	-2.479e+01	0.08%	0.00%	52.6bp (29.4bp)	MA0036.1_GATA2/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
25 *		1e-10	-2.457e+01	0.22%	0.04%	52.6bp (45.7bp)	MA0117.1_Mafb/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
26 *		1e-10	-2.322e+01	0.11%	0.01%	47.9bp (60.0bp)	POL009.1_DCE_S_II/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
27 *		1e-10	-2.322e+01	0.11%	0.01%	42.7bp (37.2bp)	GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer More Information \| Similar Motifs Found	motif file (matrix)
28 *		1e-9	-2.211e+01	9.45%	7.79%	56.5bp (54.9bp)	Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer More Information \| Similar Motifs Found	motif file (matrix)
29 *		1e-9	-2.210e+01	1.36%	0.77%	56.3bp (56.4bp)	HEB?/mES-Nanog-ChIP-Seq/Homer More Information \| Similar Motifs Found	motif file (matrix)
30 *		1e-9	-2.172e+01	0.09%	0.01%	63.0bp (57.1bp)	PH0078.1_Hoxd13/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
31 *		1e-9	-2.129e+01	0.07%	0.00%	59.6bp (0.0bp)	PB0052.1_Plagl1_1/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
32 *		1e-9	-2.101e+01	0.17%	0.03%	51.6bp (53.2bp)	PB0077.1_Spdef_1/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
33 *		1e-9	-2.099e+01	0.20%	0.04%	54.9bp (35.7bp)	SD0002.1_at_AC_acceptor/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
34 *		1e-7	-1.790e+01	0.07%	0.00%	55.0bp (8.4bp)	Znf263(Zf)/K562-Znf263-ChIP-Seq/Homer More Information \| Similar Motifs Found	motif file (matrix)
35 *		1e-7	-1.760e+01	0.10%	0.01%	61.7bp (50.8bp)	PB0164.1_Smad3_2/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
36 *		1e-7	-1.699e+01	1.51%	0.97%	58.4bp (57.4bp)	PB0156.1_Plagl1_2/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
37 *		1e-6	-1.598e+01	0.07%	0.01%	52.9bp (3.5bp)	RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq/Homer More Information \| Similar Motifs Found	motif file (matrix)
38 *		1e-6	-1.598e+01	0.07%	0.01%	57.6bp (26.9bp)	PB0133.1_Hic1_2/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
39 *		1e-6	-1.561e+01	9.76%	8.36%	56.8bp (57.5bp)	POL010.1_DCE_S_III/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
40 *		1e-6	-1.547e+01	0.14%	0.03%	31.6bp (63.3bp)	MA0164.1_Nr2e3/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
41 *		1e-6	-1.528e+01	0.09%	0.01%	61.2bp (12.5bp)	Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer More Information \| Similar Motifs Found	motif file (matrix)
42 *		1e-4	-1.123e+01	0.33%	0.15%	62.0bp (47.9bp)	MA0095.1_YY1/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
43 *		1e-2	-5.978e+00	2.52%	2.12%	57.0bp (49.6bp)	ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq/Homer More Information \| Similar Motifs Found	motif file (matrix)