Homer de novo Motif Results

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 1199
Total background sequences = 48281
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-21	-5.012e+01	10.01%	3.66%	1619.9bp (1725.0bp)	PB0036.1_Irf6_1/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
2		1e-19	-4.483e+01	31.44%	20.21%	1745.8bp (1757.5bp)	MA0032.1_FOXC1/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
3		1e-18	-4.291e+01	7.67%	2.61%	1578.3bp (1713.2bp)	NRF1/Promoter/Homer More Information \| Similar Motifs Found	motif file (matrix)
4		1e-18	-4.198e+01	38.20%	26.49%	1791.1bp (1736.6bp)	CHR/Cell-Cycle-Exp/Homer More Information \| Similar Motifs Found	motif file (matrix)
5		1e-17	-3.961e+01	26.02%	16.26%	1668.3bp (1745.2bp)	MA0164.1_Nr2e3/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
6		1e-15	-3.601e+01	23.60%	14.68%	1597.9bp (1770.4bp)	HIF2a(HLH)/O785-HIF2a-ChIP-Seq(GSE34871)/Homer More Information \| Similar Motifs Found	motif file (matrix)
7		1e-13	-3.146e+01	22.27%	14.12%	1815.2bp (1713.0bp)	PB0108.1_Atf1_2/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
8		1e-13	-3.100e+01	1.75%	0.19%	1695.3bp (1641.3bp)	Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer More Information \| Similar Motifs Found	motif file (matrix)
9		1e-12	-2.952e+01	62.55%	52.06%	1731.2bp (1747.1bp)	MA0164.1_Nr2e3/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
10		1e-12	-2.916e+01	8.17%	3.62%	1823.4bp (1817.9bp)	PB0045.1_Myb_1/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
11		1e-12	-2.824e+01	20.52%	13.08%	1626.7bp (1748.6bp)	POL008.1_DCE_S_I/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
12 *		1e-10	-2.440e+01	23.19%	15.85%	1798.3bp (1743.2bp)	SD0001.1_at_AC_acceptor/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
13 *		1e-10	-2.337e+01	0.92%	0.05%	1248.6bp (1544.3bp)	PB0088.1_Tcfap2e_1/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
14 *		1e-9	-2.147e+01	0.92%	0.06%	683.7bp (1737.9bp)	PB0013.1_Eomes_1/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
15 *		1e-9	-2.143e+01	2.34%	0.56%	1427.8bp (1594.5bp)	PB0178.1_Sox8_2/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
16 *		1e-8	-2.035e+01	29.69%	22.28%	1758.5bp (1778.4bp)	ZFX(Zf)/mES-Zfx-ChIP-Seq/Homer More Information \| Similar Motifs Found	motif file (matrix)
17 *		1e-8	-1.983e+01	36.45%	28.59%	1692.6bp (1761.9bp)	PB0094.1_Zfp128_1/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
18 *		1e-8	-1.924e+01	33.28%	25.77%	1643.8bp (1770.9bp)	MA0035.1_Gata1/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
19 *		1e-8	-1.908e+01	0.83%	0.06%	1273.5bp (1702.5bp)	E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer More Information \| Similar Motifs Found	motif file (matrix)
20 *		1e-8	-1.844e+01	4.09%	1.62%	1360.3bp (1729.5bp)	PH0077.1_Hoxd12/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
21 *		1e-7	-1.744e+01	6.59%	3.37%	1621.4bp (1745.9bp)	PB0035.1_Irf5_1/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
22 *		1e-7	-1.735e+01	1.92%	0.47%	2174.1bp (1923.3bp)	MA0150.1_NFE2L2/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
23 *		1e-7	-1.688e+01	32.11%	25.20%	1667.1bp (1737.2bp)	PB0178.1_Sox8_2/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
24 *		1e-6	-1.599e+01	33.44%	26.64%	1705.6bp (1780.4bp)	MA0035.1_Gata1/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
25 *		1e-6	-1.546e+01	6.84%	3.73%	1496.2bp (1709.8bp)	Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer More Information \| Similar Motifs Found	motif file (matrix)
26 *		1e-6	-1.483e+01	1.17%	0.21%	1268.1bp (1980.1bp)	PB0149.1_Myb_2/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
27 *		1e-6	-1.439e+01	1.75%	0.47%	1278.7bp (1807.0bp)	PB0044.1_Mtf1_1/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
28 *		1e-6	-1.412e+01	0.50%	0.03%	624.8bp (1551.4bp)	PB0138.1_Irf4_2/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
29 *		1e-6	-1.407e+01	16.26%	11.56%	1767.8bp (1730.6bp)	PB0048.1_Nkx3-1_1/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
30 *		1e-5	-1.272e+01	2.75%	1.11%	1779.3bp (1734.6bp)	PB0137.1_Irf3_2/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
31 *		1e-4	-1.151e+01	0.50%	0.04%	419.1bp (1379.4bp)	Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq/Homer More Information \| Similar Motifs Found	motif file (matrix)
32 *		1e-4	-1.050e+01	1.42%	0.43%	1092.0bp (1699.6bp)	Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq/Homer More Information \| Similar Motifs Found	motif file (matrix)
33 *		1e-4	-9.513e+00	0.75%	0.14%	681.4bp (1673.6bp)	MA0024.1_E2F1/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
34 *		1e-3	-9.163e+00	3.50%	1.86%	1338.1bp (1712.3bp)	PB0100.1_Zfp740_1/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
35 *		1e-3	-8.978e+00	1.17%	0.35%	1500.8bp (1714.3bp)	PB0178.1_Sox8_2/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
36 *		1e-3	-8.794e+00	43.45%	38.30%	1636.9bp (1799.7bp)	PB0052.1_Plagl1_1/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
37 *		1e-3	-8.265e+00	9.59%	6.88%	1889.1bp (1747.1bp)	PH0040.1_Hmbox1/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
38 *		1e-3	-8.105e+00	39.78%	34.98%	1815.2bp (1722.3bp)	PB0129.1_Glis2_2/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
39 *		1e-2	-6.204e+00	0.33%	0.05%	436.2bp (1781.8bp)	PB0160.1_Rfxdc2_2/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
40 *		1e-2	-6.076e+00	4.59%	3.05%	1143.8bp (1806.4bp)	MA0003.1_TFAP2A/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
41 *		1e-2	-4.697e+00	0.25%	0.04%	471.3bp (1192.2bp)	PH0015.1_Crx/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
42 *		1e0	-2.118e+00	0.17%	0.05%	422.3bp (1611.1bp)	MA0038.1_Gfi/Jaspar More Information \| Similar Motifs Found	motif file (matrix)
43 *		1e0	-1.774e+00	0.25%	0.12%	780.9bp (1731.5bp)	Znf263(Zf)/K562-Znf263-ChIP-Seq/Homer More Information \| Similar Motifs Found	motif file (matrix)